[HTML][HTML] Challenges in neoantigen-directed therapeutics
A fundamental prerequisite for the efficacy of cancer immunotherapy is the presence of
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …
functional, antigen-specific T cells within the tumor. Neoantigen-directed therapy is a …
Transcriptomics for clinical and experimental biology research: hang on a seq
Sequencing the human genome empowers translational medicine, facilitating transcriptome‐
wide molecular diagnosis, pathway biology, and drug repositioning. Initially, microarrays are …
wide molecular diagnosis, pathway biology, and drug repositioning. Initially, microarrays are …
[HTML][HTML] Maternal cecal microbiota transfer rescues early-life antibiotic-induced enhancement of type 1 diabetes in mice
Early-life antibiotic exposure perturbs the intestinal microbiota and accelerates type 1
diabetes (T1D) development in the NOD mouse model. Here, we found that maternal cecal …
diabetes (T1D) development in the NOD mouse model. Here, we found that maternal cecal …
[HTML][HTML] TDP-43 loss induces extensive cryptic polyadenylation in ALS/FTD
Nuclear depletion and cytoplasmic aggregation of the RNA-binding protein TDP-43 is the
hallmark of ALS, occurring in over 97% of cases. A key consequence of TDP-43 nuclear loss …
hallmark of ALS, occurring in over 97% of cases. A key consequence of TDP-43 nuclear loss …
MAAPER: model-based analysis of alternative polyadenylation using 3′ end-linked reads
Most eukaryotic genes express alternative polyadenylation (APA) isoforms. A growing
number of RNA sequencing methods, especially those used for single-cell transcriptome …
number of RNA sequencing methods, especially those used for single-cell transcriptome …
Prediction of transcript structure and concentration using RNA-Seq data
Alternative splicing (AS) is a key post-transcriptional modification that helps in increasing
protein diversity. Almost 90% of the protein-coding genes in humans are known to undergo …
protein diversity. Almost 90% of the protein-coding genes in humans are known to undergo …
Anti-bias training for (sc) RNA-seq: experimental and computational approaches to improve precision
RNA-seq, including single cell RNA-seq (scRNA-seq), is plagued by insufficient sensitivity
and lack of precision. As a result, the full potential of (sc) RNA-seq is limited. Major factors in …
and lack of precision. As a result, the full potential of (sc) RNA-seq is limited. Major factors in …
Comprehensive modular analyses of scar subtypes illuminate underlying molecular mechanisms and potential therapeutic targets
L Liu, L Lu, M Qiu, N Han, S Dai, S Shi… - International Wound …, 2024 - Wiley Online Library
Pathological scarring resulting from traumas and wounds, such as hypertrophic scars and
keloids, pose significant aesthetic, functional and psychological challenges. This study …
keloids, pose significant aesthetic, functional and psychological challenges. This study …
Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data
FR Ringeling, S Chakraborty, C Vissers… - Nature …, 2022 - nature.com
The accuracy of methods for assembling transcripts from short-read RNA sequencing data is
limited by the lack of long-range information. Here we introduce Ladder-seq, an approach …
limited by the lack of long-range information. Here we introduce Ladder-seq, an approach …