Using Xplor–NIH for NMR molecular structure determination

CD Schwieters, JJ Kuszewski, GM Clore - Progress in nuclear magnetic …, 2006 - Elsevier
Xplor–NIH [1] is a generalized package for biomolecular structure determination from
experimental NMR data combined with known geometric data. This is achieved by seeking …

Solid-state NMR structure of a pathogenic fibril of full-length human α-synuclein

MD Tuttle, G Comellas, AJ Nieuwkoop… - Nature structural & …, 2016 - nature.com
Misfolded α-synuclein amyloid fibrils are the principal components of Lewy bodies and
neurites, hallmarks of Parkinson's disease (PD). We present a high-resolution structure of an …

Determination of conformationally heterogeneous states of proteins

M Vendruscolo - Current opinion in structural biology, 2007 - Elsevier
Although conformationally heterogeneous states of proteins are involved in a range of
important biological processes, including protein folding and misfolding, and signal …

Atomic resolution structure of full-length human insulin fibrils

S Suladze, R Sarkar, N Rodina, K Bokvist… - Proceedings of the …, 2024 - pnas.org
Patients with type 1 diabetes mellitus who are dependent on an external supply of insulin
develop insulin-derived amyloidosis at the sites of insulin injection. A major component of …

Structure and dynamics of micelle-bound human α-synuclein

TS Ulmer, A Bax, NB Cole, RL Nussbaum - Journal of Biological Chemistry, 2005 - jbc.org
Misfolding of the protein α-synuclein (aS), which associates with presynaptic vesicles, has
been implicated in the molecular chain of events leading to Parkinson's disease. Here, the …

Optimized molecular dynamics force fields applied to the helix− coil transition of polypeptides

RB Best, G Hummer - The journal of physical chemistry B, 2009 - ACS Publications
Obtaining the correct balance of secondary structure propensities is a central priority in
protein force-field development. Given that current force fields differ significantly in their α …

Xplor‐NIH for molecular structure determination from NMR and other data sources

CD Schwieters, GA Bermejo, GM Clore - Protein Science, 2018 - Wiley Online Library
Xplor‐NIH is a popular software package for biomolecular structure determination from
nuclear magnetic resonance (NMR) and other data sources. Here, some of Xplor‐NIH's most …

Evaluating protein structures determined by structural genomics consortia

A Bhattacharya, R Tejero… - … : Structure, Function, and …, 2007 - Wiley Online Library
Structural genomics projects are providing large quantities of new 3D structural data for
proteins. To monitor the quality of these data, we have developed the protein structure …

Combined covalent-electrostatic model of hydrogen bonding improves structure prediction with Rosetta

MJ O'Meara, A Leaver-Fay, MD Tyka… - Journal of chemical …, 2015 - ACS Publications
Interactions between polar atoms are challenging to model because at very short ranges
they form hydrogen bonds (H-bonds) that are partially covalent in character and exhibit …

The structure of the integrin αIIbβ3 transmembrane complex explains integrin transmembrane signalling

TL Lau, C Kim, MH Ginsberg, TS Ulmer - The EMBO journal, 2009 - embopress.org
Heterodimeric integrin adhesion receptors regulate cell migration, survival and
differentiation in metazoa by communicating signals bi‐directionally across the plasma …