Phase transitions of associative biomacromolecules

RV Pappu, SR Cohen, F Dar, M Farag, M Kar - Chemical Reviews, 2023 - ACS Publications
Multivalent proteins and nucleic acids, collectively referred to as multivalent associative
biomacromolecules, provide the driving forces for the formation and compositional …

Direct prediction of intrinsically disordered protein conformational properties from sequence

JM Lotthammer, GM Ginell, D Griffith, R Emenecker… - Biophysical …, 2024 - cell.com
Intrinsically disordered regions (IDRs) are ubiquitous across all domains of life and play a
range of functional roles. While folded domains are generally well-described by a stable 3D …

Dynamical control enables the formation of demixed biomolecular condensates

AZ Lin, KM Ruff, F Dar, A Jalihal, MR King… - Nature …, 2023 - nature.com
Cellular matter can be organized into compositionally distinct biomolecular condensates.
For example, in Ashbya gossypii, the RNA-binding protein Whi3 forms distinct condensates …

Approaches to characterize chromatin subcompartment organization in the cell nucleus

R Weinmann, L Frank, K Rippe - Current Opinion in Structural Biology, 2023 - Elsevier
The mechanism of self-organization of chromatin subcompartments on the 0.1–1 μm scale
and their impact on genome-associated activities has long been a key aspect of research on …

[HTML][HTML] Cytochrome c prompts the recruitment of its nuclear partners SET/TAF-Iβ and NPM1 into biomolecular condensates

MÁ Casado-Combreras, A Velázquez-Campoy… - Iscience, 2024 - cell.com
Compartmentalization of proteins by liquid-liquid phase separation (LLPS) is used by cells
to control biochemical reactions spatially and temporally. Among them, the recruitment of …

[HTML][HTML] Exploring the potential of TENO and WENO schemes for simulating under-resolved turbulent flows in the atmosphere using Euler equations

A Navas-Montilla, J Guallart, P Solán-Fustero… - Computers & …, 2024 - Elsevier
This paper focuses on the design and analysis of very high-order finite volume methods for
the computation of simplified meso-and micro-scale atmospheric flows. In a dry atmosphere …

Affinity hierarchies and amphiphilic proteins underlie the co-assembly of nucleolar and heterochromatin condensates

V Rajshekar, O Adame-Arana, G Bajpai, S Safran… - Biophysical …, 2024 - cell.com
Nucleoli are surrounded by pericentromeric heterochromatin (PCH), reflecting a close
spatial association between the two largest biomolecular condensates in eukaryotic nuclei …

Decoding Phase Separation of Prion-Like Domains through Data-Driven Scaling Laws

MJ Maristany, AA Gonzalez, JR Espinosa, J Huertas… - bioRxiv, 2023 - biorxiv.org
Proteins containing prion-like low complexity domains (PLDs) are common drivers of the
formation of biomolecular condensates and are prone to misregulation due to amino acid …

Universal predictive scaling laws for phase separation of prion-like low complexity domains

J Joseph, MJ Maristany, AA Gonzalez… - 2023 - researchsquare.com
Proteins containing prion-like low complexity domains (PLDs) are common drivers of the
formation of biomolecular condensates and are prone to misregulation due to amino acid …

[PDF][PDF] Cytochrome c prompts the recruitment of its nuclear partners SET/TAF-Ib and NPM1 into biomolecular condensates

A Combreras, M Campoy, V Martinho, MAD Belle… - zaguan.unizar.es
Compartmentalization of proteins by liquid-liquid phase separation (LLPS) is used by cells
to control biochemical reactions spatially and temporally. Among them, the recruitment of …