Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing

DE Miller, C Staber, J Zeitlinger… - G3: Genes, Genomes …, 2018 - academic.oup.com
The Drosophila genus is a unique group containing a wide range of species that occupy
diverse ecosystems. In addition to the most widely studied species, Drosophila …

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data

V Jayakumar, Y Sakakibara - Briefings in bioinformatics, 2019 - academic.oup.com
Long reads obtained from third-generation sequencing platforms can help overcome the
long-standing challenge of the de novo assembly of sequences for the genomic analysis of …

[PDF][PDF] Comparison of full-length transcriptomes of different imidacloprid-resistant strains of Rhopalosiphum padi (L.)

X Wang, X Xu, F Ullah, Q Ding, X Gao, N Desneux… - Entomol …, 2021 - researchgate.net
Although the bird cherry-oat aphid, Rhopalosiphum padi (L.)(Homoptera: Aphididae), is an
important grain pest, has developed resistance against various insecticides, information on …

A phylogeny for the Drosophila montium species group: a model clade for comparative analyses

WR Conner, EK Delaney, MJ Bronski… - Molecular Phylogenetics …, 2021 - Elsevier
The Drosophila montium species group is a clade of 94 named species, closely related to
the model species D. melanogaster. The montium species group is distributed over a broad …

Natural variation at a single gene generates sexual antagonism across fitness components in Drosophila

BB Rusuwa, H Chung, SL Allen, FD Frentiu… - Current Biology, 2022 - cell.com
Mutations with conflicting fitness effects in males and females accumulate in sexual
populations, reducing their adaptive capacity. 1, 2 Although quantitative genetic studies …

High-quality genome assemblies reveal long non-coding RNAs expressed in ant brains

EJ Shields, L Sheng, AK Weiner, BA Garcia, R Bonasio - Cell reports, 2018 - cell.com
Ants are an emerging model system for neuroepigenetics, as embryos with virtually identical
genomes develop into different adult castes that display diverse physiology, morphology …

Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing

M Paris, R Boyer, R Jaenichen, J Wolf, M Karageorgi… - Scientific reports, 2020 - nature.com
Over the past decade, the spotted wing Drosophila, Drosophila suzukii, has invaded Europe
and America and has become a major agricultural pest in these areas, thereby prompting …

Whole Genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses

MJ Bronski, CC Martinez, HA Weld… - G3: Genes, Genomes …, 2020 - academic.oup.com
Large groups of species with well-defined phylogenies are excellent systems for testing
evolutionary hypotheses. In this paper, we describe the creation of a comparative genomic …

Using BUSCO to assess insect genomic resources

RM Waterhouse, M Seppey, FA Simão… - … Genomics: Methods and …, 2019 - Springer
The increasing affordability of sequencing technologies offers many new and exciting
opportunities to address a diverse array of biological questions. This is evidenced in …

Single-molecule real-time sequencing facilitates the analysis of transcripts and splice isoforms of anthers in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

C Tan, H Liu, J Ren, X Ye, H Feng, Z Liu - BMC plant biology, 2019 - Springer
Background Anther development has been extensively studied at the transcriptional level,
but a systematic analysis of full-length transcripts on a genome-wide scale has not yet been …