Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information

P Zakeri, J Simm, A Arany, S ElShal, Y Moreau - Bioinformatics, 2018 - academic.oup.com
Motivation Most gene prioritization methods model each disease or phenotype individually,
but this fails to capture patterns common to several diseases or phenotypes. To overcome …

Scalable nonparametric multiway data analysis

S Zhe, Z Xu, X Chu, Y Qi, Y Park - Artificial intelligence and …, 2015 - proceedings.mlr.press
Multiway data analysis deals with multiway arrays, ie, tensors, and the goal is twofold:
predicting missing entries by modeling the interactions between array elements and …

Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC

J Simm, A Arany, P Zakeri, T Haber… - 2017 IEEE 27th …, 2017 - ieeexplore.ieee.org
Bayesian matrix factorization is a method of choice for making predictions for large-scale
incomplete matrices, due to availability of efficient Gibbs sampling schemes and its …

Neuralcp: Bayesian multiway data analysis with neural tensor decomposition

B Liu, L He, Y Li, S Zhe, Z Xu - Cognitive Computation, 2018 - Springer
Multiway data are widely observed in neuroscience, health informatics, food science, etc.
Tensor decomposition is an important technique for capturing high-order interactions among …

[PDF][PDF] Scalable Probabilistic Tensor Factorization for Binary and Count Data.

P Rai, C Hu, M Harding, L Carin - IJCAI, 2015 - ch237.github.io
Tensor factorization methods provide a useful way to extract latent factors from complex
multirelational data, and also for predicting missing data. Develo** tensor factorization …

Zero-truncated poisson tensor factorization for massive binary tensors

C Hu, P Rai, L Carin - arxiv preprint arxiv:1508.04210, 2015 - arxiv.org
We present a scalable Bayesian model for low-rank factorization of massive tensors with
binary observations. The proposed model has the following key properties:(1) in contrast to …

An iterative reweighted method for tucker decomposition of incomplete tensors

L Yang, J Fang, H Li, B Zeng - IEEE Transactions on Signal …, 2016 - ieeexplore.ieee.org
We consider the problem of low-rank decomposition of incomplete tensors. Since many real-
world data lie on an intrinsically low-dimensional subspace, tensor low-rank decomposition …

[PDF][PDF] Tensor Completion with Side Information: A Riemannian Manifold Approach.

T Zhou, H Qian, Z Shen, C Zhang, C Xu - IJCAI, 2017 - ijcai.org
By restricting the iterate on a nonlinear manifold, the recently proposed Riemannian
optimization methods prove to be both efficient and effective in low rank tensor completion …

Detecting structural changes in longitudinal network data

JH Park, Y Sohn - 2020 - projecteuclid.org
Dynamic modeling of longitudinal networks has been an increasingly important topic in
applied research. While longitudinal network data commonly exhibit dramatic changes in its …

[PDF][PDF] Online Continuous-Time Tensor Factorization Based on Pairwise Interactive Point Processes.

H Xu, D Luo, L Carin - IJCAI, 2018 - ijcai.org
A continuous-time tensor factorization method is developed for event sequences containing
multiple “modalities.” Each data element is a point in a tensor, whose dimensions are …