Small‐Molecule Quenchers for Förster Resonance Energy Transfer: Structure, Mechanism, and Applications

B Fang, Y Shen, B Peng, H Bai, L Wang… - Angewandte …, 2022 - Wiley Online Library
For fluorogenic probes, Förster resonance energy transfer (FRET) is one of the most widely
used mechanisms to realize the detection of biochemical activities. Dark quenchers relax …

A DNA walker as a fluorescence signal amplifier

D Wang, C Vietz, T Schröder, G Acuna, B Lalkens… - Nano …, 2017 - ACS Publications
Sensing nucleic acids typically involves the recognition of a specific sequence and reporting
by, for example, a fluorogenic reaction yielding one activated dye molecule per detected …

[HTML][HTML] Unraveling multi-state molecular dynamics in single-molecule FRET experiments. I. Theory of FRET-lines

A Barth, O Opanasyuk, TO Peulen… - The Journal of …, 2022 - pubs.aip.org
Conformational dynamics of biomolecules are of fundamental importance for their function.
Single-molecule studies of Förster Resonance Energy Transfer (smFRET) between a …

Single antibody detection in a DNA origami nanoantenna

M Pfeiffer, K Trofymchuk, S Ranallo, F Ricci, F Steiner… - Iscience, 2021 - cell.com
DNA nanotechnology offers new biosensing approaches by templating different sensor and
transducer components. Here, we combine DNA origami nanoantennas with label-free …

Synergistic combination of unquenching and plasmonic fluorescence enhancement in fluorogenic nucleic acid hybridization probes

C Vietz, B Lalkens, GP Acuna, P Tinnefeld - Nano Letters, 2017 - ACS Publications
Fluorogenic nucleic acid hybridization probes are widely used for detecting and quantifying
nucleic acids. The achieved sensitivity strongly depends on the contrast between a …

3D single-molecule tracking enables direct hybridization kinetics measurement in solution

C Liu, JM Obliosca, YL Liu, YA Chen, N Jiang, HC Yeh - Nanoscale, 2017 - pubs.rsc.org
Single-molecule measurements of DNA hybridization kinetics are mostly performed on a
surface or inside a trap. Here we demonstrate a time-resolved, 3D single-molecule tracking …

Efficient synthesis of a wide‐range absorbing azaphthalocyanine dark quencher and its application to dual‐labeled oligonucleotide probes for quantitative real‐time …

J Demuth, R Kucera, K Kopecky… - … A European Journal, 2018 - Wiley Online Library
Unsymmetrical dialkylamino‐substituted zinc azaphthalocyanine (AzaPc) exhibits unique
spectral and photophysical properties for dark quenchers of fluorescence in DNA …

Triangulating nucleic acid conformations using multicolor surface energy transfer

RA Riskowski, RE Armstrong, NL Greenbaum… - ACS …, 2016 - ACS Publications
Optical ruler methods employing multiple fluorescent labels offer great potential for
correlating distances among several sites, but are generally limited to interlabel distances …

Fluorophore photostability and saturation in the hotspot of DNA origami nanoantennas

L Grabenhorst, K Trofymchuk, F Steiner… - … and applications in …, 2020 - iopscience.iop.org
Fluorescent dyes used for single-molecule spectroscopy can undergo millions of excitation-
emission cycles before photobleaching. Due to the upconcentration of light in a plasmonic …

How blinking affects photon correlations in multichromophoric nanoparticles

T Schröder, S Bange, J Schedlbauer, F Steiner… - ACS …, 2021 - ACS Publications
A single chromophore can only emit a maximum of one single photon per excitation cycle.
This limitation results in a phenomenon commonly referred to as photon antibunching (pAB) …