Colloquium: Criticality and dynamical scaling in living systems

MA Munoz - Reviews of Modern Physics, 2018 - APS
A celebrated and controversial hypothesis suggests that some biological systems—parts,
aspects, or groups of them—may extract important functional benefits from operating at the …

[HTML][HTML] Concepts in Boolean network modeling: What do they all mean?

JD Schwab, SD Kühlwein, N Ikonomi, M Kühl… - Computational and …, 2020 - Elsevier
Boolean network models are one of the simplest models to study complex dynamic behavior
in biological systems. They can be applied to unravel the mechanisms regulating the …

Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution

IG Johnston, K Dingle, SF Greenbury… - Proceedings of the …, 2022 - National Acad Sciences
Engineers routinely design systems to be modular and symmetric in order to increase
robustness to perturbations and to facilitate alterations at a later date. Biological structures …

Network biology: understanding the cell's functional organization

AL Barabasi, ZN Oltvai - Nature reviews genetics, 2004 - nature.com
A key aim of postgenomic biomedical research is to systematically catalogue all molecules
and their interactions within a living cell. There is a clear need to understand how these …

[책][B] Dynamical processes on complex networks

A Barrat, M Barthelemy, A Vespignani - 2008 - books.google.com
The availability of large data sets has allowed researchers to uncover complex properties
such as large-scale fluctuations and heterogeneities in many networks, leading to the …

[책][B] Handbook of finite fields

GL Mullen, D Panario - 2013 - api.taylorfrancis.com
The CRC Handbook of Finite Fields (hereafter referred to as the Handbook) is a reference
book for the theory and applications of finite fields. It is not intended to be an introductory …

[책][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Boolean modeling in systems biology: an overview of methodology and applications

RS Wang, A Saadatpour, R Albert - Physical biology, 2012 - iopscience.iop.org
Mathematical modeling of biological processes provides deep insights into complex cellular
systems. While quantitative and continuous models such as differential equations have been …

Scale-free networks in cell biology

R Albert - Journal of cell science, 2005 - journals.biologists.com
A cell's behavior is a consequence of the complex interactions between its numerous
constituents, such as DNA, RNA, proteins and small molecules. Cells use signaling …

Emerging properties of animal gene regulatory networks

EH Davidson - Nature, 2010 - nature.com
Gene regulatory networks (GRNs) provide system level explanations of developmental and
physiological functions in the terms of the genomic regulatory code. Depending on their …