A brief history of protein sorting prediction
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …
has been a focus point of research. The prediction of signal peptides and protein subcellular …
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core
L Zimmermann, A Stephens, SZ Nam, D Rau… - Journal of molecular …, 2018 - Elsevier
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) is a free, one-stop
web service for protein bioinformatic analysis. It currently offers 34 interconnected external …
web service for protein bioinformatic analysis. It currently offers 34 interconnected external …
Type V secretion: mechanism (s) of autotransport through the bacterial outer membrane
Autotransport in Gram-negative bacteria denotes the ability of surface-localized proteins to
cross the outer membrane (OM) autonomously. Autotransporters perform this task with the …
cross the outer membrane (OM) autonomously. Autotransporters perform this task with the …
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
Abstract The MPI Bioinformatics Toolkit (http://toolkit. tuebingen. mpg. de) is an open,
interactive web service for comprehensive and collaborative protein bioinformatic analysis. It …
interactive web service for comprehensive and collaborative protein bioinformatic analysis. It …
Bacterial membrane transporter systems for aromatic compounds: regulation, engineering, and biotechnological applications
I Mutanda, J Sun, J Jiang, D Zhu - Biotechnology Advances, 2022 - Elsevier
Aromatic compounds are ubiquitous in nature; they are the building blocks of abundant
lignin, and constitute a substantial proportion of synthetic chemicals and organic pollutants …
lignin, and constitute a substantial proportion of synthetic chemicals and organic pollutants …
PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL
Background In recent years, an exponential growing number of tools for protein sequence
analysis, editing and modeling tasks have been put at the disposal of the scientific …
analysis, editing and modeling tasks have been put at the disposal of the scientific …
Type V secretion systems in bacteria
E Fan, N Chauhan, DG Udatha… - … of Bacterial Pathogens, 2016 - Wiley Online Library
Gram‐negative bacteria are surrounded by two membranes, called the outer and inner
membranes. The space between these membranes, the periplasm, is spanned by a …
membranes. The space between these membranes, the periplasm, is spanned by a …
Discriminating outer membrane proteins with fuzzy K-nearest neighbor algorithms based on the general form of Chou's PseAAC
Outer membrane proteins (OMPs) play important roles in cell biology. In addition, OMPs are
targeted by multiple drugs. The identification of OMPs from genomic sequences and …
targeted by multiple drugs. The identification of OMPs from genomic sequences and …
Efficient subfractionation of gram-negative bacteria for proteomics studies
Proteomics studies of pathogenic bacteria are an important basis for biomarker discovery
and for the development of antimicrobial drugs and vaccines. Especially where vaccines are …
and for the development of antimicrobial drugs and vaccines. Especially where vaccines are …
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins
Abstract Motivation The PRED-TMBB method is based on Hidden Markov Models and is
capable of predicting the topology of beta-barrel outer membrane proteins and discriminate …
capable of predicting the topology of beta-barrel outer membrane proteins and discriminate …