Therapeutic peptides targeting PPI in clinical development: Overview, mechanism of action and perspectives

W Cabri, P Cantelmi, D Corbisiero, T Fantoni… - Frontiers in Molecular …, 2021 - frontiersin.org
Targeting protein-protein interactions (PPIs) has been recently recognized as an emerging
therapeutic approach for several diseases. Up today, more than half a million PPI …

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery

PC Havugimana, RK Goel, S Phanse, A Youssef… - Nature …, 2022 - nature.com
Co-fractionation/mass spectrometry (CF/MS) enables the map** of endogenous
macromolecular networks on a proteome scale, but current methods are experimentally …

Differential co-expression analyses allow the identification of critical signalling pathways altered during tumour transformation and progression

A Savino, P Provero, V Poli - International journal of molecular sciences, 2020 - mdpi.com
Biological systems respond to perturbations through the rewiring of molecular interactions,
organised in gene regulatory networks (GRNs). Among these, the increasingly high …

Enzymes in the cholesterol synthesis pathway: interactomics in the cancer context

P Ershov, L Kaluzhskiy, Y Mezentsev, E Yablokov… - Biomedicines, 2021 - mdpi.com
A global protein interactome ensures the maintenance of regulatory, signaling and structural
processes in cells, but at the same time, aberrations in the repertoire of protein–protein …

Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks

G Gulfidan, M Soylu, D Demirel, HBC Erdonmez… - Archives of biochemistry …, 2022 - Elsevier
The identification of biomolecules associated with papillary thyroid cancer (PTC) has upmost
importance for the elucidation of the disease mechanism and the development of effective …

Differential network analysis reveals the key role of the ECM-receptor pathway in α-particle-induced malignant transformation

W Yan, W Hu, Y Song, X Liu, Z Zhou, W Li… - … Therapy-Nucleic Acids, 2024 - cell.com
Space particle radiation is a major environmental factor in spaceflight, and it is known to
cause body damage and even trigger cancer, but with unknown molecular etiologies. To …

Experimental murine models for colorectal cancer research

Í Neto, J Rocha, MM Gaspar, CP Reis - Cancers, 2023 - mdpi.com
Simple Summary In its early stages, colorectal cancer (CRC) is a localized tumor, but when it
metastasizes, it has dramatic consequences. Murine models in CRC research are important …

Potential early markers for breast cancer: a proteomic approach comparing saliva and serum samples in a pilot study

I Sinha, RL Fogle, G Gulfidan, AE Stanley… - International journal of …, 2023 - mdpi.com
Breast cancer is the second leading cause of death for women in the United States, and
early detection could offer patients the opportunity to receive early intervention. The current …

[HTML][HTML] Proteomics and its applications in breast cancer

AN Neagu, D Whitham, E Buonanno… - American journal of …, 2021 - ncbi.nlm.nih.gov
Breast cancer is an individually unique, multi-faceted and chameleonic disease, an eternal
challenge for the new era of high-integrated precision diagnostic and personalized …

Explaining identity-aware graph classifiers through the language of motifs

A Perotti, P Bajardi, F Bonchi… - 2023 International Joint …, 2023 - ieeexplore.ieee.org
Most methods for explaining black-box classifiers (eg, on tabular data, images, or time
series) rely on measuring the impact that removing/perturbing features has on the model …