Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines

JA Birchler, RA Veitia - Proceedings of the National Academy of Sciences, 2012 - pnas.org
We summarize, in this review, the evidence that genomic balance influences gene
expression, quantitative traits, dosage compensation, aneuploid syndromes, population …

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees

P Khaitovich, I Hellmann, W Enard, K Nowick… - Science, 2005 - science.org
The determination of the chimpanzee genome sequence provides a means to study both
structural and functional aspects of the evolution of the human genome. Here we compare …

The gene balance hypothesis: from classical genetics to modern genomics

JA Birchler, RA Veitia - The Plant Cell, 2007 - academic.oup.com
The concept of genetic balance traces back to the early days of genetics. Additions or
subtractions of single chromosomes to the karyotype (aneuploidy) produced greater impacts …

Dosage balance in gene regulation: biological implications

JA Birchler, NC Riddle, DL Auger, RA Veitia - Trends in Genetics, 2005 - cell.com
Classical studies in genetics involving aneuploidy and ploidy comparisons and sex-
determination mechanisms indicated a balance phenomenon such that changes of …

Reconstructing the evolution history of networked complex systems

J Wang, YJ Zhang, C Xu, J Li, J Sun, J **e… - Nature …, 2024 - nature.com
The evolution processes of complex systems carry key information in the systems' functional
properties. Applying machine learning algorithms, we demonstrate that the historical …

Genetic properties influencing the evolvability of gene expression

CR Landry, B Lemos, SA Rifkin, WJ Dickinson, DL Hartl - Science, 2007 - science.org
Identifying the properties of gene networks that influence their evolution is a fundamental
research goal. However, modes of evolution cannot be inferred solely from the distribution of …

Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and …

B Lemos, BR Bettencourt… - … biology and evolution, 2005 - academic.oup.com
Organismic evolution requires that variation at distinct hierarchical levels and attributes be
coherently integrated, often in the face of disparate environmental and genetic pressures. A …

Evolutionary strategies drive a balance of the interacting gene products for the CBL and CIPK gene families

X Zhang, X Li, R Zhao, Y Zhou, Y Jiao - new phytologist, 2020 - Wiley Online Library
Genes encoding interacting proteins tend to be co‐retained after whole‐genome duplication
(WGD). The preferential retention after WGD has been explained by the gene balance …

One hundred years of gene balance: how stoichiometric issues affect gene expression, genome evolution, and quantitative traits

JA Birchler, RA Veitia - Cytogenetic and Genome Research, 2021 - karger.com
A century ago experiments with the flowering plant Datura stramonium and the fruit fly
Drosophila melanogaster revealed that adding an extra chromosome to a karyotype was …