Charting histone modifications and the functional organization of mammalian genomes

VW Zhou, A Goren, BE Bernstein - Nature Reviews Genetics, 2011 - nature.com
A succession of technological advances over the past decade have enabled researchers to
chart maps of histone modifications and related chromatin structures with increasing …

Epigenome in early mammalian development: inheritance, reprogramming and establishment

Q Xu, W **e - Trends in cell biology, 2018 - cell.com
Drastic epigenetic reprogramming takes place during preimplantation development, leading
to the conversion of terminally differentiated gametes to a totipotent embryo. Deficiencies in …

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state

A Rotem, O Ram, N Shoresh, RA Sperling… - Nature …, 2015 - nature.com
Chromatin profiling provides a versatile means to investigate functional genomic elements
and their regulation. However, current methods yield ensemble profiles that are insensitive …

Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease

C Kuscu, S Arslan, R Singh, J Thorpe, M Adli - Nature biotechnology, 2014 - nature.com
RNA-guided genome editing with the CRISPR-Cas9 system has great potential for basic
and clinical research, but the determinants of targeting specificity and the extent of off-target …

ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors

C Schmidl, AF Rendeiro, NC Sheffield, C Bock - Nature methods, 2015 - nature.com
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is widely used to map
histone marks and transcription factor binding throughout the genome. Here we present …

[HTML][HTML] H3K4me3 breadth is linked to cell identity and transcriptional consistency

BA Benayoun, EA Pollina, D Ucar, S Mahmoudi… - Cell, 2014 - cell.com
Trimethylation of histone H3 at lysine 4 (H3K4me3) is a chromatin modification known to
mark the transcription start sites of active genes. Here, we show that H3K4me3 domains that …

Isolation of single human hematopoietic stem cells capable of long-term multilineage engraftment

F Notta, S Doulatov, E Laurenti, A Poeppl, I Jurisica… - Science, 2011 - science.org
Lifelong blood cell production is dependent on rare hematopoietic stem cells (HSCs) to
perpetually replenish mature cells via a series of lineage-restricted intermediates …

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations

J Brind'Amour, S Liu, M Hudson, C Chen… - Nature …, 2015 - nature.com
Combined chromatin immunoprecipitation and next-generation sequencing (ChIP-seq) has
enabled genome-wide epigenetic profiling of numerous cell lines and tissue types. A major …

[HTML][HTML] Genome-wide chromatin state transitions associated with developmental and environmental cues

J Zhu, M Adli, JY Zou, G Verstappen, M Coyne… - Cell, 2013 - cell.com
Differences in chromatin organization are key to the multiplicity of cell states that arise from a
single genetic background, yet the landscapes of in vivo tissues remain largely uncharted …

Live cell imaging of low-and non-repetitive chromosome loci using CRISPR-Cas9

P Qin, M Parlak, C Kuscu, J Bandaria, M Mir… - Nature …, 2017 - nature.com
Imaging chromatin dynamics is crucial to understand genome organization and its role in
transcriptional regulation. Recently, the RNA-guidable feature of CRISPR-Cas9 has been …