Deep learning tools to accelerate antibiotic discovery

A Cesaro, M Bagheri, M Torres, F Wan… - Expert Opinion on …, 2023 - Taylor & Francis
Introduction As machine learning (ML) and artificial intelligence (AI) expand to many
segments of our society, they are increasingly being used for drug discovery. Recent deep …

Machine learning and artificial neural network accelerated computational discoveries in materials science

Y Hong, B Hou, H Jiang, J Zhang - Wiley Interdisciplinary …, 2020 - Wiley Online Library
Artificial intelligence (AI) has been referred to as the “fourth paradigm of science,” and as
part of a coherent toolbox of data‐driven approaches, machine learning (ML) dramatically …

The power of deep learning to ligand-based novel drug discovery

II Baskin - Expert opinion on drug discovery, 2020 - Taylor & Francis
Introduction Deep discriminative and generative neural-network models are becoming an
integral part of the modern approach to ligand-based novel drug discovery. The variety of …

Machine learning‐assisted search for novel coagulants: When machine learning can be efficient even if data availability is low

A Rovenchak, M Druchok - Journal of Computational Chemistry, 2024 - Wiley Online Library
Abstract Design of new drugs is a challenging process: a candidate molecule should satisfy
multiple conditions to act properly and make the least side‐effect—perfect candidates …

Few-shot learning via graph embeddings with convolutional networks for low-data molecular property prediction

L Torres, JP Arrais, B Ribeiro - Neural Computing and Applications, 2023 - Springer
Graph neural networks and convolutional architectures have proven to be pivotal in
improving the prediction of molecular properties in drug discovery. However, this is …

Modesus: A machine learning tool for selection of molecular descriptors in qsar studies applied to molecular informatics

MJ Martínez, M Razuc, I Ponzoni - BioMed research …, 2019 - Wiley Online Library
The selection of the most relevant molecular descriptors to describe a target variable in the
context of QSAR (Quantitative Structure‐Activity Relationship) modelling is a challenging …

Graph-Convolutional Neural Net Model of the Statistical Torsion Profiles for Small Organic Molecules

E Raush, R Abagyan, M Totrov - Journal of Chemical Information …, 2022 - ACS Publications
We present a graph-convolutional neural network (GCNN)-based method for learning and
prediction of statistical torsional profiles (STP) in small organic molecules based on the …

VDAC1-interacting molecules promote cell death in cancer organoids through mitochondrial-dependent metabolic interference

SC Nibali, S De Siervi, E Luchinat, A Magrì, A Messina… - Iscience, 2024 - cell.com
The voltage-dependent anion-selective channel isoform 1 (VDAC1) is a pivotal component
in cellular metabolism and apoptosis with a prominent role in many cancer types, offering a …

Deep Neural Network Applications for Bioinformatics

D Amanatidis, K Vaitsi, M Dossis - 2022 7th South-East Europe …, 2022 - ieeexplore.ieee.org
As Deep Learning and Bioinformatics are constantly evolving fields, this review focuses on
four types of Deep Neural Networks; Feedforward, Recurrent, Convolutional and Generative …

[HTML][HTML] Druggability of Pharmaceutical Compounds Using Lipinski Rules with Machine Learning

S Nhlapho, MHL Nyathi, BL Ngwenya, T Dube… - Sciences of …, 2024 - etflin.com
In the field of pharmaceutical research, identifying promising pharmaceutical compounds is
a critical challenge. The observance of Lipinski's Rule of Five (RO5) is a fundamental …