The topology toolkit

J Tierny, G Favelier, JA Levine… - IEEE transactions on …, 2017 - ieeexplore.ieee.org
This system paper presents the Topology ToolKit (TTK), a software platform designed for the
topological analysis of scalar data in scientific visualization. While topological data analysis …

In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms

AC Bauer, H Abbasi, J Ahrens, H Childs… - Computer Graphics …, 2016 - Wiley Online Library
The considerable interest in the high performance computing (HPC) community regarding
analyzing and visualization data without first writing to disk, ie, in situ processing, is due to …

Combining in-situ and in-transit processing to enable extreme-scale scientific analysis

JC Bennett, H Abbasi, PT Bremer… - SC'12: Proceedings …, 2012 - ieeexplore.ieee.org
With the onset of extreme-scale computing, I/O constraints make it increasingly difficult for
scientists to save a sufficient amount of raw simulation data to persistent storage. One …

A survey of topology‐based methods in visualization

C Heine, H Leitte, M Hlawitschka… - Computer Graphics …, 2016 - Wiley Online Library
This paper presents the state of the art in the area of topology‐based visualization. It
describes the process and results of an extensive annotation for generating a definition and …

InSituNet: Deep image synthesis for parameter space exploration of ensemble simulations

W He, J Wang, H Guo, KC Wang… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
We propose InSituNet, a deep learning based surrogate model to support parameter space
exploration for ensemble simulations that are visualized in situ. In situ visualization …

Data reduction techniques for simulation, visualization and data analysis

S Li, N Marsaglia, C Garth, J Woodring… - Computer graphics …, 2018 - Wiley Online Library
Data reduction is increasingly being applied to scientific data for numerical simulations,
scientific visualizations and data analyses. It is most often used to lower I/O and storage …

Urban pulse: Capturing the rhythm of cities

F Miranda, H Doraiswamy, M Lage… - IEEE transactions on …, 2016 - ieeexplore.ieee.org
Cities are inherently dynamic. Interesting patterns of behavior typically manifest at several
key areas of a city over multiple temporal resolutions. Studying these patterns can greatly …

Capturing biologically complex tissue-specific membranes at different levels of compositional complexity

HI Ingólfsson, H Bhatia, T Zeppelin… - The Journal of …, 2020 - ACS Publications
Plasma membranes (PMs) contain hundreds of different lipid species that contribute
differently to overall bilayer properties. By modulation of these properties, membrane protein …

Morse complexes for shape segmentation and homological analysis: discrete models and algorithms

L De Floriani, U Fugacci, F Iuricich… - Computer graphics …, 2015 - Wiley Online Library
Morse theory offers a natural and mathematically‐sound tool for shape analysis and
understanding. It allows studying the behavior of a scalar function defined on a manifold …

Progressive wasserstein barycenters of persistence diagrams

J Vidal, J Budin, J Tierny - IEEE transactions on visualization …, 2019 - ieeexplore.ieee.org
This paper presents an efficient algorithm for the progressive approximation of Wasserstein
barycenters of persistence diagrams, with applications to the visual analysis of ensemble …