HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation

MJ Suskiewicz, F Zobel, TEH Ogden, P Fontana… - Nature, 2020 - nature.com
The anti-cancer drug target poly (ADP-ribose) polymerase 1 (PARP1) and its close
homologue, PARP2, are early responders to DNA damage in human cells,. After binding to …

Features and development of Coot

P Emsley, B Lohkamp, WG Scott… - Biological …, 2010 - journals.iucr.org
Coot is a molecular-graphics application for model building and validation of biological
macromolecules. The program displays electron-density maps and atomic models and …

Phosphoribosylation of ubiquitin promotes serine ubiquitination and impairs conventional ubiquitination

S Bhogaraju, S Kalayil, Y Liu, F Bonn, T Colby, I Matic… - Cell, 2016 - cell.com
Conventional ubiquitination involves the ATP-dependent formation of amide bonds between
the ubiquitin C terminus and primary amines in substrate proteins. Recently, SdeA, an …

Phaser crystallographic software

AJ McCoy, RW Grosse-Kunstleve, PD Adams… - Applied …, 2007 - journals.iucr.org
Phaser is a program for phasing macromolecular crystal structures by both molecular
replacement and experimental phasing methods. The novel phasing algorithms …

[HTML][HTML] PHENIX: a comprehensive Python-based system for macromolecular structure solution

PD Adams, PV Afonine, G Bunkóczi… - Biological …, 2010 - journals.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological
processes at a molecular level. However, significant time and effort are still required to solve …

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

TC Terwilliger, RW Grosse-Kunstleve… - Biological …, 2008 - journals.iucr.org
The PHENIX AutoBuild wizard is a highly automated tool for iterative model building,
structure refinement and density modification using RESOLVE model building, RESOLVE …

[HTML][HTML] Solving structures of protein complexes by molecular replacement with Phaser

AJ McCoy - Biological Crystallography, 2007 - journals.iucr.org
Molecular replacement (MR) generally becomes more difficult as the number of components
in the asymmetric unit requiring separate MR models (ie the dimensionality of the search) …

Signal amplification and transduction in phytochrome photosensors

H Takala, A Björling, O Berntsson, H Lehtivuori… - Nature, 2014 - nature.com
Sensory proteins must relay structural signals from the sensory site over large distances to
regulatory output domains. Phytochromes are a major family of red-light-sensing kinases …

[SÁCH][B] Principles of protein X-ray crystallography

J Drenth - 2007 - books.google.com
X-ray crystallography is an established method for studying the structure of proteins and
other macromolecules. As the importance of proteins grows, researchers in many fields have …

[HTML][HTML] General strategy to humanize a camelid single-domain antibody and identification of a universal humanized nanobody scaffold

C Vincke, R Loris, D Saerens… - Journal of Biological …, 2009 - Elsevier
Nanobodies, single-domain antigen-binding fragments of camelid-specific heavy-chain only
antibodies offer special advantages in therapy over classic antibody fragments because of …