Biomolecule large-amplitude motion and solvation dynamics: modelling and probes from THz to X-rays

DM Leitner, M Havenith, M Gruebele - International Reviews in …, 2006 - Taylor & Francis
Biomolecules are innately flexible, and undergo large-amplitude motions that affect the
surrounding solvation shell. Dynamical X-ray scattering provides direct insight into global …

Time-resolved resonance Raman spectroscopy and application to studies on ultrafast protein dynamics

Y Mizutani - Bulletin of the Chemical Society of Japan, 2017 - academic.oup.com
Protein dynamics play a fundamental role in allosteric regulation, which is vital to the
function of many proteins. In many proteins, rather than a direct interaction, mutual …

A relaxation-assisted 2D IR spectroscopy method

DV Kurochkin, SRG Naraharisetty… - Proceedings of the …, 2007 - National Acad Sciences
A method of two-dimensional infrared (2D IR) spectroscopy called relaxation-assisted 2D IR
(RA 2DIR) is proposed that utilizes vibrational energy relaxation transport in molecules to …

[KSIĄŻKA][B] Proteins: energy, heat and signal flow

DM Leitner, JE Straub - 2009 - taylorfrancis.com
Computational modeling can provide a wealth of insight into how energy flow in proteins
mediates protein function. Computational methods can also address fundamental questions …

High suitability of tryptophan residues as a spectroscopic thermometer for local temperature in proteins under nonequilibrium conditions

S Yamashita, M Mizuno, Y Mizutani - The Journal of Chemical Physics, 2022 - pubs.aip.org
Vibrational energy flow in the many degrees of freedom in proteins governs energy-barrier-
crossing processes, such as conformational exchanges and thermal reactions. The intensity …

Bond connectivity measured via relaxation-assisted two-dimensional infrared spectroscopy

SRG Naraharisetty, VM Kasyanenko… - The Journal of chemical …, 2008 - pubs.aip.org
The relaxation-assisted two-dimensional infrared (RA 2DIR) method is a novel technique for
probing structures of molecules, which relies on vibrational energy transport in molecules. In …

A donor–acceptor pair for the real time study of vibrational energy transfer in proteins

HM Müller-Werkmeister, J Bredenbeck - Physical Chemistry Chemical …, 2014 - pubs.rsc.org
Vibrational energy transfer (VET) is believed to play an important role in protein function.
Theoretical studies predict highly directional, anisotropic VET in proteins. Distinct energy …

A peptide's perspective of water dynamics

A Ghosh, RM Hochstrasser - Chemical physics, 2011 - Elsevier
This perspective is focused on amide groups of peptides interacting with water. 2D IR
spectroscopy has already enabled structural aspects of the peptide backbone to be …

Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution

R Bloem, AG Dijkstra, TC Jansen… - The Journal of chemical …, 2008 - pubs.aip.org
Population transfer between vibrational eigenstates is important for many phenomena in
chemistry. In solution, this transfer is induced by fluctuations in molecular conformation as …

Energy transport via coordination bonds

VM Kasyanenko, Z Lin, GI Rubtsov… - The Journal of …, 2009 - pubs.aip.org
Vibrational energy transport in transition metal complexes involves stages where energy
crosses relatively weak coordination bonds between a coordinated metal atom and the …