Modeling Microbial Communities: Perspective and Challenges
Microbial communities are immensely important due to their widespread presence and
profound impact on various facets of life. Understanding these complex systems …
profound impact on various facets of life. Understanding these complex systems …
METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Background Advances in microbiome science are being driven in large part due to our
ability to study and infer microbial ecology from genomes reconstructed from mixed …
ability to study and infer microbial ecology from genomes reconstructed from mixed …
The post-genomic era of biological network alignment
Biological network alignment aims to find regions of topological and functional (dis)
similarities between molecular networks of different species. Then, network alignment can …
similarities between molecular networks of different species. Then, network alignment can …
[PDF][PDF] Integrated Anchor and Social Link Predictions across Social Networks.
To enjoy more social network services, users nowadays are usually involved in multiple
online social media sites at the same time. Across these social networks, users can be …
online social media sites at the same time. Across these social networks, users can be …
Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
Analogous to genomic sequence alignment that allows for across-species transfer of
biological knowledge between conserved sequence regions, biological network alignment …
biological knowledge between conserved sequence regions, biological network alignment …
2-hydr_ensemble: lysine 2-hydroxyisobutyrylation identification with ensemble method
W Bao, B Yang, B Chen - Chemometrics and Intelligent Laboratory Systems, 2021 - Elsevier
Lysine 2-hydroxyisobutyrylation is a novel detected post translational modification type in
the research of proteomics. Such modification research may be helpful to several diseases' …
the research of proteomics. Such modification research may be helpful to several diseases' …
A comparison of algorithms for the pairwise alignment of biological networks
Motivation: As biological inquiry produces ever more network data, such as protein–protein
interaction networks, gene regulatory networks and metabolic networks, many algorithms …
interaction networks, gene regulatory networks and metabolic networks, many algorithms …
[HTML][HTML] Molecular similarity: Theory, applications, and perspectives
Molecular similarity pervades much of our understanding and rationalization of chemistry.
This has become particularly evident in the current data-intensive era of chemical research …
This has become particularly evident in the current data-intensive era of chemical research …
Global alignment of protein-protein interaction networks: A survey
In this paper, we survey algorithms that perform global alignment of networks or graphs.
Global network alignment aligns two or more given networks to find the best map** from …
Global network alignment aligns two or more given networks to find the best map** from …
Multiple network alignment via multiMAGNA++
V Vijayan, T Milenković - IEEE/ACM transactions on …, 2017 - ieeexplore.ieee.org
Network alignment (NA) aims to find a node map** that identifies topologically or
functionally similar network regions between molecular networks of different species …
functionally similar network regions between molecular networks of different species …