NCBI Taxonomy: a comprehensive update on curation, resources and tools
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …
organism names and classifications for every sequence in the nucleotide and protein …
[HTML][HTML] The human skin microbiome
Functioning as the exterior interface of the human body with the environment, skin acts as a
physical barrier to prevent the invasion of foreign pathogens while providing a home to the …
physical barrier to prevent the invasion of foreign pathogens while providing a home to the …
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
Abstract UNITE (https://unite. ut. ee/) is a web-based database and sequence management
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains
and curates a publicly available database of annotated genomic, transcript, and protein …
and curates a publicly available database of annotated genomic, transcript, and protein …
Diet rapidly and reproducibly alters the human gut microbiome
Long-term dietary intake influences the structure and activity of the trillions of
microorganisms residing in the human gut,,,,, but it remains unclear how rapidly and …
microorganisms residing in the human gut,,,,, but it remains unclear how rapidly and …
RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
Fungal diversity revisited: 2.2 to 3.8 million species
The question of how many species of Fungi there are has occasioned much speculation,
with figures mostly posited from around half a million to 10 million, and in one extreme case …
with figures mostly posited from around half a million to 10 million, and in one extreme case …
Towards a unified paradigm for sequence‐based identification of fungi
The nuclear ribosomal internal transcribed spacer (ITS) region is the formal fungal barcode
and in most cases the marker of choice for the exploration of fungal diversity in …
and in most cases the marker of choice for the exploration of fungal diversity in …
[HTML][HTML] Environmental DNA–An emerging tool in conservation for monitoring past and present biodiversity
The continuous decline in Earth's biodiversity represents a major crisis and challenge for the
21st century, and there is international political agreement to slow down or halt this decline …
21st century, and there is international political agreement to slow down or halt this decline …
Global diversity and geography of soil fungi
Introduction The kingdom Fungi is one of the most diverse groups of organisms on Earth,
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …