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Recent developments in synthetic biology and metabolic engineering in microalgae towards biofuel production
In the wake of the uprising global energy crisis, microalgae have emerged as an alternate
feedstock for biofuel production. In addition, microalgae bear immense potential as bio-cell …
feedstock for biofuel production. In addition, microalgae bear immense potential as bio-cell …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
Machine learning for the advancement of genome-scale metabolic modeling
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …
interrelations between genotype, phenotype, and external environment. The recent …
VANTED v2: a framework for systems biology applications
H Rohn, A Junker, A Hartmann, E Grafahrend-Belau… - BMC systems …, 2012 - Springer
Background Experimental datasets are becoming larger and increasingly complex,
spanning different data domains, thereby expanding the requirements for respective tool …
spanning different data domains, thereby expanding the requirements for respective tool …
Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi‐omics perspective
M Kohlstedt, PK Sappa, H Meyer… - Environmental …, 2014 - Wiley Online Library
The Gram‐positive bacterium B acillus subtilis encounters nutrient limitations and osmotic
stress in its natural soil ecosystem. To ensure survival and sustain growth, highly integrated …
stress in its natural soil ecosystem. To ensure survival and sustain growth, highly integrated …
A Genome-Scale Metabolic Model of Soybean (Glycine max) Highlights Metabolic Fluxes in Seedlings
Until they become photoautotrophic juvenile plants, seedlings depend upon the reserves
stored in seed tissues. These reserves must be mobilized and metabolized, and their …
stored in seed tissues. These reserves must be mobilized and metabolized, and their …
Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering
Abstract Models are used to represent aspects of the real world for specific purposes, and
mathematical models have opened up new approaches in studying the behavior and …
mathematical models have opened up new approaches in studying the behavior and …
Toward the role of interaction in visual analytics
This paper firstly provides a general introduction in the most important aspects and ideas of
Visual Analytics. This multidisciplinary field focuses on the analytical reasoning of typically …
Visual Analytics. This multidisciplinary field focuses on the analytical reasoning of typically …
Integrated network analysis and effective tools in plant systems biology
A Fukushima, S Kanaya, K Nishida - Frontiers in plant science, 2014 - frontiersin.org
One of the ultimate goals in plant systems biology is to elucidate the genotype-phenotype
relationship in plant cellular systems. Integrated network analysis that combines omics data …
relationship in plant cellular systems. Integrated network analysis that combines omics data …
ReactionFlow: an interactive visualization tool for causality analysis in biological pathways
Background Molecular and systems biologists are tasked with the comprehension and
analysis of incredibly complex networks of biochemical interactions, called pathways, that …
analysis of incredibly complex networks of biochemical interactions, called pathways, that …