DualSPHysics: Open-source parallel CFD solver based on Smoothed Particle Hydrodynamics (SPH)
DualSPHysics is a hardware accelerated Smoothed Particle Hydrodynamics code
developed to solve free-surface flow problems. DualSPHysics is an open-source code …
developed to solve free-surface flow problems. DualSPHysics is an open-source code …
Biomolecular dynamics at long timesteps: Bridging the timescale gap between simulation and experimentation
T Schlick, E Barth, M Mandziuk - Annual review of biophysics …, 1997 - annualreviews.org
▪ Abstract Innovative algorithms have been developed during the past decade for simulating
Newtonian physics for macromolecules. A major goal is alleviation of the severe …
Newtonian physics for macromolecules. A major goal is alleviation of the severe …
Calving glaciers and ice shelves
Calving, or the release of icebergs from glaciers and floating ice shelves, is an important
process transferring mass into the world's oceans. Calving glaciers and ice sheets make a …
process transferring mass into the world's oceans. Calving glaciers and ice sheets make a …
SPH simulation of floating structures with moorings
The open-source code DualSPHysics is applied to simulate the interaction of sea waves
with floating offshore structures, which are typically moored to the seabed, such as vessels …
with floating offshore structures, which are typically moored to the seabed, such as vessels …
Splitting methods
I thought that instead of the great number of precepts of which logic is composed, I would
have enough with the four following ones, provided that I made a firm and unalterable …
have enough with the four following ones, provided that I made a firm and unalterable …
SPHysics–development of a free-surface fluid solver–Part 1: Theory and formulations
A free-surface fluid solver called SPHysics is presented. Part 1 provides a description of the
governing equations based on Smoothed Particle Hydrodynamics (SPH) theory. The paper …
governing equations based on Smoothed Particle Hydrodynamics (SPH) theory. The paper …
Applicability of Smoothed Particle Hydrodynamics for estimation of sea wave impact on coastal structures
The present work describes the validation of an SPH-based technique for wave loading on
coastal structures. The so-called DualSPHysics numerical model has been used for the …
coastal structures. The so-called DualSPHysics numerical model has been used for the …
The Nosé–Poincaré method for constant temperature molecular dynamics
We present a new extended phase space method for constant temperature (canonical
ensemble) molecular dynamics. Our starting point is the Hamiltonian introduced by Nosé to …
ensemble) molecular dynamics. Our starting point is the Hamiltonian introduced by Nosé to …
Lipid bilayer pressure profiles and mechanosensitive channel gating
J Gullingsrud, K Schulten - Biophysical journal, 2004 - cell.com
The function of membrane proteins often depends on the proteins' interaction with their lipid
environment, spectacularly so in the case of mechanosensitive channels, which are gated …
environment, spectacularly so in the case of mechanosensitive channels, which are gated …
Symplectic splitting methods for rigid body molecular dynamics
A Dullweber, B Leimkuhler… - The Journal of chemical …, 1997 - pubs.aip.org
Rigid body molecular models possess symplectic structure and time-reversal symmetry.
Standard numerical integration methods destroy both properties, introducing nonphysical …
Standard numerical integration methods destroy both properties, introducing nonphysical …