Insights from 20 years of bacterial genome sequencing
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
Microalgae with artificial intelligence: A digitalized perspective on genetics, systems and products
With recent advances in novel gene-editing tools such as RNAi, ZFNs, TALENs, and
CRISPR-Cas9, the possibility of altering microalgae toward designed properties for various …
CRISPR-Cas9, the possibility of altering microalgae toward designed properties for various …
A systematic assessment of current genome-scale metabolic reconstruction tools
Background Several genome-scale metabolic reconstruction software platforms have been
developed and are being continuously updated. These tools have been widely applied to …
developed and are being continuously updated. These tools have been widely applied to …
A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes
A common biological pathway reconstruction approach—as implemented by many
automatic biological pathway services (such as the KAAS and RAST servers) and the …
automatic biological pathway services (such as the KAAS and RAST servers) and the …
[BOK][B] Analysis of biological networks
BH Junker, F Schreiber - 2008 - Wiley Online Library
Analysis of biological networks ANALYSIS OF BIOLOGICAL NETWORKS Page 2
ANALYSIS OF BIOLOGICAL NETWORKS EDITED BY BJO RN H. JUNKER and FALK …
ANALYSIS OF BIOLOGICAL NETWORKS EDITED BY BJO RN H. JUNKER and FALK …
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer
RJ Siezen, JET van Hylckama Vlieg - Microbial cell factories, 2011 - Springer
In the past decade it has become clear that the lactic acid bacterium Lactobacillus plantarum
occupies a diverse range of environmental niches and has an enormous diversity in …
occupies a diverse range of environmental niches and has an enormous diversity in …
Community flux balance analysis for microbial consortia at balanced growth
A central focus in studies of microbial communities is the elucidation of the relationships
between genotype, phenotype, and dynamic community structure. Here, we present a new …
between genotype, phenotype, and dynamic community structure. Here, we present a new …
Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model
A genome-scale metabolic model of the lactic acid bacterium Lactobacillus plantarum
WCFS1 was constructed based on genomic content and experimental data. The complete …
WCFS1 was constructed based on genomic content and experimental data. The complete …
Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria
M Liu, A Nauta, C Francke… - Applied and environmental …, 2008 - Am Soc Microbiol
Lactic acid bacteria (LAB) have been widely used as starter or nonstarter cultures in the
dairy industry for over a thousand years. They play an essential role in ffavor formation …
dairy industry for over a thousand years. They play an essential role in ffavor formation …
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
High-throughput metabolomic experiments aim at identifying and ultimately quantifying all
metabolites present in biological systems. The metabolites are interconnected through …
metabolites present in biological systems. The metabolites are interconnected through …