[HTML][HTML] AI-driven deep learning techniques in protein structure prediction

L Chen, Q Li, KFA Nasif, Y **e, B Deng, S Niu… - International journal of …, 2024 - mdpi.com
Protein structure prediction is important for understanding their function and behavior. This
review study presents a comprehensive review of the computational models used in …

Generalized biomolecular modeling and design with RoseTTAFold All-Atom

R Krishna, J Wang, W Ahern, P Sturmfels, P Venkatesh… - Science, 2024 - science.org
Deep-learning methods have revolutionized protein structure prediction and design but are
presently limited to protein-only systems. We describe RoseTTAFold All-Atom (RFAA), which …

Function, therapeutic potential, and inhibition of Hsp70 chaperones

AJ Ambrose, E Chapman - Journal of medicinal chemistry, 2021 - ACS Publications
Hsp70s are among the most highly conserved proteins in all of biology. Through an iterative
binding and release of exposed hydrophobic residues on client proteins, Hsp70s can …

Protein complex prediction with AlphaFold-Multimer

R Evans, M O'Neill, A Pritzel, N Antropova, A Senior… - biorxiv, 2021 - biorxiv.org
While the vast majority of well-structured single protein chains can now be predicted to high
accuracy due to the recent AlphaFold model, the prediction of multi-chain protein complexes …

The structure assessment web server: for proteins, complexes and more

AM Waterhouse, G Studer, X Robin… - Nucleic Acids …, 2024 - academic.oup.com
The 'structure assessment'web server is a one-stop shop for interactive evaluation and
benchmarking of structural models of macromolecular complexes including proteins and …

SWISS-MODEL: homology modelling of protein structures and complexes

A Waterhouse, M Bertoni, S Bienert… - Nucleic acids …, 2018 - academic.oup.com
Homology modelling has matured into an important technique in structural biology,
significantly contributing to narrowing the gap between known protein sequences and …

[HTML][HTML] The molecular basis for sarcomere organization in vertebrate skeletal muscle

Z Wang, M Grange, T Wagner, AL Kho, M Gautel… - Cell, 2021 - cell.com
Sarcomeres are force-generating and load-bearing devices of muscles. A precise molecular
picture of how sarcomeres are built underpins understanding their role in health and …

Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers

LJ McGuffin, NS Edmunds, AG Genc… - Nucleic acids …, 2023 - academic.oup.com
The IntFOLD server based at the University of Reading has been a leading method over the
past decade in providing free access to accurate prediction of protein structures and …

The fork protection complex promotes parental histone recycling and epigenetic memory

SJ Charlton, V Flury, Y Kanoh, AV Genzor, L Kollenstart… - Cell, 2024 - cell.com
The inheritance of parental histones across the replication fork is thought to mediate
epigenetic memory. Here, we reveal that fission yeast Mrc1 (CLASPIN in humans) binds H3 …

New prediction categories in CASP15

A Kryshtafovych, M Antczak… - Proteins: Structure …, 2023 - Wiley Online Library
Prediction categories in the Critical Assessment of Structure Prediction (CASP) experiments
change with the need to address specific problems in structure modeling. In CASP15, four …