Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

S Hoban, FI Archer, LD Bertola, JG Bragg… - Biological …, 2022 - Wiley Online Library
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …

Demography and its effects on genomic variation in crop domestication

BS Gaut, DK Seymour, Q Liu, Y Zhou - Nature plants, 2018 - nature.com
Over two thousand plant species have been modified morphologically through cultivation
and human use. Here, we review three aspects of crop domestication that are currently …

Insights into human genetic variation and population history from 929 diverse genomes

A Bergström, SA McCarthy, R Hui, MA Almarri, Q Ayub… - Science, 2020 - science.org
INTRODUCTION Large-scale human genome-sequencing studies to date have been limited
to large, metropolitan populations or to small numbers of genomes from each group. Much …

Antagonistic control of seed dormancy in rice by two bHLH transcription factors

F Xu, J Tang, S Wang, X Cheng, H Wang, S Ou… - Nature …, 2022 - nature.com
Preharvest sprouting (PHS) due to lack of seed dormancy seriously threatens crop
production worldwide. As a complex quantitative trait, breeding of crop cultivars with suitable …

The effect of 16S rRNA region choice on bacterial community metabarcoding results

YS Bukin, YP Galachyants, IV Morozov, SV Bukin… - Scientific data, 2019 - nature.com
In this work, we compare the resolution of V2-V3 and V3-V4 16S rRNA regions for the
purposes of estimating microbial community diversity using paired-end Illumina MiSeq …

[PDF][PDF] POPART: full-feature software for haplotype network construction.

JW Leigh, D Bryant, S Nakagawa - Methods in Ecology & …, 2015 - researchgate.net
popart: full‐feature software for haplotype network construction Page 1 APPLICATION
POPART: full-feature software for haplotype network construction Jessica W. Leigh* and David …

vcfr: a package to manipulate and visualize variant call format data in R

BJ Knaus, NJ Grünwald - Molecular ecology resources, 2017 - Wiley Online Library
Software to call single‐nucleotide polymorphisms or related genetic variants has converged
on the variant call format (VCF) as the output format of choice. This has created a need for …

Basidiomycete yeasts in the cortex of ascomycete macrolichens

T Spribille, V Tuovinen, P Resl, D Vanderpool… - Science, 2016 - science.org
For over 140 years, lichens have been regarded as a symbiosis between a single fungus,
usually an ascomycete, and a photosynthesizing partner. Other fungi have long been known …

Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects

X Li, J Gao, J Song, K Guo, S Hou, X Wang, Q He… - Molecular plant, 2022 - cell.com
Foxtail millet (Setaria italica), which was domesticated from the wild species green foxtail
(Setaria viridis), is a rich source of phytonutrients for humans. To evaluate how breeding …

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

E Huerta-Sánchez, X **, Asan, Z Bianba, BM Peter… - Nature, 2014 - nature.com
As modern humans migrated out of Africa, they encountered many new environmental
conditions, including greater temperature extremes, different pathogens and higher …