Genetics in geographically structured populations: defining, estimating and interpreting FST

KE Holsinger, BS Weir - Nature Reviews Genetics, 2009 - nature.com
Wright's F-statistics, and especially F ST, provide important insights into the evolutionary
processes that influence the structure of genetic variation within and among populations …

Identity by descent: variation in meiosis, across genomes, and in populations

EA Thompson - Genetics, 2013 - academic.oup.com
Gene identity by descent (IBD) is a fundamental concept that underlies genetically mediated
similarities among relatives. Gene IBD is traced through ancestral meioses and is defined …

Functional extinction of birds drives rapid evolutionary changes in seed size

M Galetti, R Guevara, MC Côrtes, R Fadini… - Science, 2013 - science.org
Local extinctions have cascading effects on ecosystem functions, yet little is known about the
potential for the rapid evolutionary change of species in human-modified scenarios. We …

Molecular population genetics

S Casillas, A Barbadilla - Genetics, 2017 - academic.oup.com
Molecular population genetics aims to explain genetic variation and molecular evolution
from population genetics principles. The field was born 50 years ago with the first measures …

How to use MIGRATE or why are Markov chain Monte Carlo programs difficult to use

P Beerli - Population genetics for animal conservation, 2009 - cambridge.org
Population genetic analyses often require the estimation of parameters such as population
size and migration rates. In the 1960s, enzyme electrophoresis was developed; it was the …

Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica

JF Ornelas, V Sosa, DE Soltis, JM Daza, C González… - PloS one, 2013 - journals.plos.org
Comparative phylogeography can elucidate the influence of historical events on current
patterns of biodiversity and can identify patterns of co-vicariance among unrelated taxa that …

Coalescent genealogy samplers: windows into population history

MK Kuhner - Trends in Ecology & Evolution, 2009 - cell.com
Coalescent genealogy samplers attempt to estimate past qualities of a population, such as
its size, growth rate, patterns of gene flow or time of divergence from another population …

Modeling sequence evolution in acute HIV-1 infection

HY Lee, EE Giorgi, BF Keele, B Gaschen… - Journal of theoretical …, 2009 - Elsevier
We describe a mathematical model and Monte Carlo (MC) simulation of viral evolution
during acute infection. We consider both synchronous and asynchronous processes of viral …

Complex population dynamics and the coalescent under neutrality

EM Volz - Genetics, 2012 - academic.oup.com
Estimates of the coalescent effective population size N e can be poorly correlated with the
true population size. The relationship between N e and the population size is sensitive to the …

Genetic footprints of late Quaternary climate change in the diversity of Patagonian‐Fueguian rodents

EP Lessa, G D'ELÍA, UFJ Pardinas - Molecular Ecology, 2010 - Wiley Online Library
Species are impacted by climate change at both ecological and evolutionary time scales.
Studies in northern continents have provided abundant evidence of dramatic shifts in …