Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

[HTML][HTML] Proteogenomic characterization of human early-onset gastric cancer

DG Mun, J Bhin, S Kim, H Kim, JH Jung, Y Jung… - Cancer cell, 2019 - cell.com
We report proteogenomic analysis of diffuse gastric cancers (GCs) in young populations.
Phosphoproteome data elucidated signaling pathways associated with somatic mutations …

Exploiting interdata relationships in next-generation proteomics analysis

B Vitrinel, HWL Koh, FM Kar, S Maity… - Molecular & Cellular …, 2019 - ASBMB
Mass spectrometry based proteomics and other technologies have matured to enable
routine quantitative, system-wide analysis of concentrations, modifications, and interactions …

Comprehensive micro-scaled proteome and phosphoproteome characterization of archived retrospective cancer repositories

C Friedrich, S Schallenberg, M Kirchner… - Nature …, 2021 - nature.com
Formalin-fixed paraffin-embedded (FFPE) tissues are a valuable resource for retrospective
clinical studies. Here, we evaluate the feasibility of (phospho-) proteomics on FFPE lung …

UBB pseudogene 4 encodes functional ubiquitin variants

ML Dubois, A Meller, S Samandi, M Brunelle… - Nature …, 2020 - nature.com
Pseudogenes are mutated copies of protein-coding genes that cannot be translated into
proteins, but a small subset of pseudogenes has been detected at the protein level …

Dual-ligand hydrogen-bonded organic framework: Tailored for mono-phosphopeptides and glycopeptides analysis

F **ong, T Zhang, J Ma, Q Jia - Talanta, 2024 - Elsevier
Hydrogen-bonded organic frameworks (HOFs) have emerged as a promising class of
materials for applications of separation and enrichment. Utilizing multiple-ligands to …

Diacylglycerol kinase-ε: properties and biological roles

RM Epand, V So, W Jennings, B Khadka… - Frontiers in Cell and …, 2016 - frontiersin.org
In mammals there are at least 10 isoforms of diacylglycerol kinases (DGK). All catalyze the
phosphorylation of diacylglycerol (DAG) to phosphatidic acid (PA). Among DGK isoforms …

Integrated proteomic and phosphoproteomic analyses of cisplatin-sensitive and resistant bladder cancer cells reveal CDK2 network as a key therapeutic target

JH Jung, S You, JW Oh, J Yoon, A Yeon, M Shahid… - Cancer letters, 2018 - Elsevier
Background Cisplatin-based chemotherapy is currently part of the standard of care for
bladder cancer (BC). Unfortunately, some patients respond poorly to chemotherapy and …

TiO2 with Tandem Fractionation (TAFT): An Approach for Rapid, Deep, Reproducible, and High-Throughput Phosphoproteome Analysis

L Ren, C Li, W Shao, W Lin, F He… - Journal of proteome …, 2018 - ACS Publications
Mass-spectrometry-based phosphoproteomic workflows traditionally require efficient
prefractionation and enrichment of phosphopeptides to gain an in-depth, global, and …

Integrative proteomic and phosphoproteomic profiling of prostate cell lines

M Katsogiannou, JB Boyer, A Valdeolivas, E Remy… - PLoS …, 2019 - journals.plos.org
Background Prostate cancer is a major public health issue, mainly because patients relapse
after androgen deprivation therapy. Proteomic strategies, aiming to reflect the functional …