Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology

PA Goloboff, A Torres, JS Arias - Cladistics, 2018 - Wiley Online Library
One of the lasting controversies in phylogenetic inference is the degree to which specific
evolutionary models should influence the choice of methods. Model‐based approaches to …

Evolution and ecology of plant architecture: integrating insights from the fossil record, extant morphology, developmental genetics and phylogenies

G Chomicki, M Coiro, SS Renner - Annals of Botany, 2017 - academic.oup.com
Background In contrast to most animals, plants have an indeterminate body plan, which
allows them to add new body parts during their lifetime. A plant's realized modular …

dispRity: A modular R package for measuring disparity

T Guillerme - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Biological data is multivariate in essence: many traits in organisms covary with each other in
space and time. This causes biologists to either reduce these to a manageable number of …

The phylogenetic relationships of neosuchian crocodiles and their implications for the convergent evolution of the longirostrine condition

SS Groh, P Upchurch, PM Barrett… - Zoological Journal of the …, 2020 - academic.oup.com
Since their origin in the Late Triassic, crocodylomorphs have had a long history of
evolutionary change. Numerous studies examined their phylogeny, but none have …

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution

J Barba‐Montoya, M Dos Reis, H Schneider… - New …, 2018 - Wiley Online Library
Through the lens of the fossil record, angiosperm diversification precipitated a Cretaceous
Terrestrial Revolution (KTR) in which pollinators, herbivores and predators underwent …

Exploring the effects of weighting against homoplasy in genealogies of palaeontological phylogenetic matrices

MD Ezcurra - Cladistics, 2024 - Wiley Online Library
Although simulations have shown that implied weighting (IW) outperforms equal weighting
(EW) in phylogenetic parsimony analyses, weighting against homoplasy lacks extensive …

[HTML][HTML] Craniodental morphology and phylogeny of marsupials

RMD Beck, RS Voss, SA Jansa - Bulletin of the American Museum of …, 2022 - BioOne
The current literature on marsupial phylogenetics includes numerous studies based on
analyses of morphological data with limited sampling of Recent and fossil taxa, and many …

The phylogeny of early amniotes and the affinities of Parareptilia and Varanopidae

DP Ford, RBJ Benson - Nature Ecology & Evolution, 2020 - nature.com
Amniotes include mammals, reptiles and birds, representing 75% of extant vertebrate
species on land. They originated around 318 million years ago in the early Late …

The systematics of the Cervidae: a total evidence approach

NS Heckeberg - PeerJ, 2020 - peerj.com
Systematic relationships of cervids have been controversial for decades. Despite new input
from molecular systematics, consensus could only be partially reached. The initial, gross …

Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets

MR Smith - Biology letters, 2019 - royalsocietypublishing.org
Phylogenetic analysis aims to establish the true relationships between taxa. Different
analytical methods, however, can reach different conclusions. In order to establish which …