[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

H Weigand, AJ Beermann, F Čiampor, FO Costa… - Science of the Total …, 2019 - Elsevier
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …

Sequencing our way towards understanding global eukaryotic biodiversity

HM Bik, DL Porazinska, S Creer, JG Caporaso… - Trends in ecology & …, 2012 - cell.com
Microscopic eukaryotes are abundant, diverse and fill critical ecological roles across every
ecosystem on Earth, yet there is a well-recognized gap in understanding of their global …

Enhanced primers for amplification of DNA barcodes from a broad range of marine metazoans

J Lobo, PM Costa, MAL Teixeira, MSG Ferreira… - BMC ecology, 2013 - Springer
Background Building reference libraries of DNA barcodes is relatively straightforward when
specifically designed primers are available to amplify the COI-5P region from a relatively …

Environmental status assessment using DNA metabarcoding: towards a genetics based marine biotic index (gAMBI)

E Aylagas, Á Borja, N Rodríguez-Ezpeleta - PloS one, 2014 - journals.plos.org
Marine ecosystem protection and conservation initiatives rely on the assessment of
ecological integrity and health status of marine environments. The AZTI's Marine Biotic Index …

The application of DNA barcodes for the identification of marine crustaceans from the North Sea and adjacent regions

MJ Raupach, A Barco, D Steinke, J Beermann… - PloS one, 2015 - journals.plos.org
During the last years DNA barcoding has become a popular method of choice for molecular
specimen identification. Here we present a comprehensive DNA barcode library of various …

Neotropical Macrobrachium (Caridea: Palaemonidae): On the Biology, Origin, and Radiation of Freshwater-Invading Shrimp

K Anger - Journal of Crustacean Biology, 2013 - academic.oup.com
Comprising extant species, Macrobrachium is the most speciose caridean genus in
Palaemonidae. It is generally considered as a monophyletic clade that lives exclusively in …

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities

J Lobo, S Shokralla, MH Costa, M Hajibabaei… - Scientific reports, 2017 - nature.com
Morphology-based profiling of benthic communities has been extensively applied to aquatic
ecosystems' health assessment. However, it remains a low-throughput, and sometimes …

Evolutionary and biogeographical patterns of barnacles from deep‐sea hydrothermal vents

S Herrera, H Watanabe, TM Shank - Molecular ecology, 2015 - Wiley Online Library
The characterization of evolutionary and biogeographical patterns is of fundamental
importance to identify factors driving biodiversity. Due to their widespread but discontinuous …

New insights into the genetic diversity of the stone crayfish: taxonomic and conservation implications

L Lovrenčić, L Bonassin, LL Boštjančić… - BMC Evolutionary …, 2020 - Springer
Background Austropotamobius torrentium is a freshwater crayfish species native to central
and south-eastern Europe, with an intricate evolutionary history and the highest genetic …

DNA sequence database as a tool to identify decapod crustaceans on the São Paulo coastline

FL Mantelatto, M Terossi, M Negri… - … DNA Part A, 2018 - Taylor & Francis
DNA barcoding has emerged as an efficient tool for taxonomy and other biodiversity fields.
The vast and speciose group of decapod crustaceans is not an exception in the current …