Genome-wide association studies

E Uffelmann, QQ Huang, NS Munung… - Nature Reviews …, 2021 - nature.com
Genome-wide association studies (GWAS) test hundreds of thousands of genetic variants
across many genomes to find those statistically associated with a specific trait or disease …

Variant interpretation using population databases: Lessons from gnomAD

S Gudmundsson, M Singer‐Berk, NA Watts… - Human …, 2022 - Wiley Online Library
Reference population databases are an essential tool in variant and gene interpretation.
Their use guides the identification of pathogenic variants amidst the sea of benign variation …

CADD v1. 7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions

M Schubach, T Maass, L Nazaretyan… - Nucleic acids …, 2024 - academic.oup.com
Abstract Machine Learning-based scoring and classification of genetic variants aids the
assessment of clinical findings and is employed to prioritize variants in diverse genetic …

Operationalizing the CARE and FAIR Principles for Indigenous data futures

SR Carroll, E Herczog, M Hudson, K Russell, S Stall - Scientific data, 2021 - nature.com
As big data, open data, and open science advance to increase access to complex and large
datasets for innovation, discovery, and decision-making, Indigenous Peoples' rights to …

The Human Pangenome Project: a global resource to map genomic diversity

T Wang, L Antonacci-Fulton, K Howe, HA Lawson… - Nature, 2022 - nature.com
The human reference genome is the most widely used resource in human genetics and is
due for a major update. Its current structure is a linear composite of merged haplotypes from …

A global approach for natural history museum collections

KR Johnson, IFP Owens, Global Collection Group - Science, 2023 - science.org
Over the past three centuries, people have collected objects and specimens and placed
them in natural history museums throughout the world. Taken as a whole, this global …

[HTML][HTML] Addressing underrepresentation in genomics research through community engagement

AA Lemke, ED Esplin, AJ Goldenberg… - The American Journal of …, 2022 - cell.com
The vision of the American Society of Human Genetics (ASHG) is that people everywhere
will realize the benefits of human genetics and genomics. Implicit in that vision is the …

Ethics of DNA research on human remains: five globally applicable guidelines

S Alpaslan-Roodenberg, D Anthony, H Babiker… - Nature, 2021 - nature.com
We are a group of archaeologists, anthropologists, curators and geneticists representing
diverse global communities and 31 countries. All of us met in a virtual workshop dedicated to …

Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA

L Whitmore, M McCauley, JA Farrell… - Nature ecology & …, 2023 - nature.com
The field of environmental DNA (eDNA) is advancing rapidly, yet human eDNA applications
remain underutilized and underconsidered. Broader adoption of eDNA analysis will produce …

Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic

M Klapper, A Hübner, A Ibrahim, I Wasmuth, M Borry… - Science, 2023 - science.org
Major advances over the past decade in the field of ancient DNA are providing access to
past paleogenomic diversity, but the diverse functions and biosynthetic capabilities of this …