Viral phylodynamics

EM Volz, K Koelle, T Bedford - PLoS computational biology, 2013 - journals.plos.org
Viral phylodynamics is defined as the study of how epidemiological, immunological, and
evolutionary processes act and potentially interact to shape viral phylogenies. Since the …

H3N2 influenza viruses in humans: Viral mechanisms, evolution, and evaluation

JD Allen, TM Ross - Human vaccines & immunotherapeutics, 2018 - Taylor & Francis
Annual seasonal influenza vaccines are composed of two influenza A strains representing
the H1N1 and H3N2 subtypes, and two influenza B strains representing the Victoria and …

Immune responses after live attenuated influenza vaccination

KGI Mohn, I Smith, H Sjursen… - Human vaccines & …, 2018 - Taylor & Francis
ABSTRACT Since 2003 (US) and 2012 (Europe) the live attenuated influenza vaccine
(LAIV) has been used as an alternative to the traditional inactivated influenza vaccines (IIV) …

Two years after pandemic influenza A/2009/H1N1: what have we learned?

VCC Cheng, KKW To, H Tse, IFN Hung… - Clinical microbiology …, 2012 - Am Soc Microbiol
The world had been anticipating another influenza pandemic since the last one in 1968. The
pandemic influenza A H1N1 2009 virus (A/2009/H1N1) finally arrived, causing the first …

The community ecology of pathogens: coinfection, coexistence and community composition

EW Seabloom, ET Borer, K Gross, AE Kendig… - Ecology …, 2015 - Wiley Online Library
Disease and community ecology share conceptual and theoretical lineages, and there has
been a resurgence of interest in strengthening links between these fields. Building on recent …

Evolutionary implications of SARS-CoV-2 vaccination for the future design of vaccination strategies

IM Rouzine, G Rozhnova - Communications medicine, 2023 - nature.com
Once the first SARS-CoV-2 vaccine became available, mass vaccination was the main pillar
of the public health response to the COVID-19 pandemic. It was very effective in reducing …

Predictive modeling of influenza shows the promise of applied evolutionary biology

DH Morris, KM Gostic, S Pompei, T Bedford… - Trends in …, 2018 - cell.com
Seasonal influenza is controlled through vaccination campaigns. Evolution of influenza virus
antigens means that vaccines must be updated to match novel strains, and vaccine …

A comprehensive review on equine influenza virus: etiology, epidemiology, pathobiology, advances in develo** diagnostics, vaccines, and control strategies

RK Singh, K Dhama, K Karthik, R Khandia… - Frontiers in …, 2018 - frontiersin.org
Among all the emerging and re-emerging animal diseases, influenza group is the prototype
member associated with severe respiratory infections in wide host species. Wherein, Equine …

Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008

A Lorusso, AL Vincent, ML Harland… - Journal of General …, 2011 - microbiologyresearch.org
Prior to the introduction of the 2009 pandemic H1N1 virus from humans into pigs, four
phylogenetic clusters (α-, β-, γ-and δ) of the haemagglutinin (HA) gene from H1 influenza …

An agent-based nested model integrating within-host and between-host mechanisms to predict an epidemic

Y Tatsukawa, MR Arefin, K Kuga, J Tanimoto - PloS one, 2023 - journals.plos.org
The COVID-19 pandemic has remarkably heightened concerns regarding the prediction of
communicable disease spread. This study introduces an innovative agent-based modeling …