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Autonomous discovery in the chemical sciences part II: outlook
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this second part, we reflect on a selection of …
discovery in the chemical sciences. In this second part, we reflect on a selection of …
Accelerators for classical molecular dynamics simulations of biomolecules
Atomistic Molecular Dynamics (MD) simulations provide researchers the ability to model
biomolecular structures such as proteins and their interactions with drug-like small …
biomolecular structures such as proteins and their interactions with drug-like small …
[HTML][HTML] Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS
The introduction of accelerator devices such as graphics processing units (GPUs) has had
profound impact on molecular dynamics simulations and has enabled order-of-magnitude …
profound impact on molecular dynamics simulations and has enabled order-of-magnitude …
Anton 3: twenty microseconds of molecular dynamics simulation before lunch
Anton 3 is the newest member in a family of supercomputers specially designed for atomic-
level simulation of molecules relevant to biology (eg, DNA, proteins, and drug molecules) …
level simulation of molecules relevant to biology (eg, DNA, proteins, and drug molecules) …
86 PFLOPS deep potential molecular dynamics simulation of 100 million atoms with ab initio accuracy
We present the GPU version of DeePMD-kit, which, upon training a deep neural network
model using ab initio data, can drive extremely large-scale molecular dynamics (MD) …
model using ab initio data, can drive extremely large-scale molecular dynamics (MD) …
FASDA: An FPGA-aided, scalable and distributed accelerator for range-limited molecular dynamics
Conducting long-timescale simulations of small molecules using Molecular Dynamics (MD)
is crucial in drug design. However, traditional methods to accelerate the process, including …
is crucial in drug design. However, traditional methods to accelerate the process, including …
High-speed and low-power molecular dynamics processing unit (MDPU) with ab initio accuracy
P Mo, Y Zhang, Z Zhao, H Sun, J Li, D Guan… - npj Computational …, 2024 - nature.com
Molecular dynamics (MD) is an indispensable atomistic-scale computational tool widely-
used in various disciplines. In the past decades, nearly all ab initio MD and machine …
used in various disciplines. In the past decades, nearly all ab initio MD and machine …
FPDeep: Scalable acceleration of CNN training on deeply-pipelined FPGA clusters
Deep convolutional Neural Networks (CNNs) have revolutionized numerous applications,
but the demand for ever more performance remains unabated. Scaling CNN computations to …
but the demand for ever more performance remains unabated. Scaling CNN computations to …
Quantum-based molecular dynamics simulations using tensor cores
Tensor cores, along with tensor processing units, represent a new form of hardware
acceleration specifically designed for deep neural network calculations in artificial …
acceleration specifically designed for deep neural network calculations in artificial …
Long-Range MD Electrostatics Force Computation on FPGAs
Strong scaling of long-range electrostatic force computation, which is a central concern of
long timescale molecular dynamics simulations, is challenging for CPUs and GPUs due to …
long timescale molecular dynamics simulations, is challenging for CPUs and GPUs due to …