MetaTransformer: deep metagenomic sequencing read classification using self-attention models

A Wichmann, E Buschong, A Müller… - NAR Genomics and …, 2023 - academic.oup.com
Deep learning has emerged as a paradigm that revolutionizes numerous domains of
scientific research. Transformers have been utilized in language modeling outperforming …

CARE 2.0: reducing false-positive sequencing error corrections using machine learning

F Kallenborn, J Cascitti, B Schmidt - BMC bioinformatics, 2022 - Springer
Background Next-generation sequencing pipelines often perform error correction as a
preprocessing step to obtain cleaned input data. State-of-the-art error correction programs …

Two-Phase Flow Pattern Identification in Vertical Pipes Using Transformer Neural Networks

CM Ruiz-Díaz, EE Perilla-Plata, OA González-Estrada - Inventions, 2024 - mdpi.com
The oil and gas industry consistently embraces innovative technologies due to the
significant expenses associated with hydrocarbon transportation, pipeline corrosion issues …

DeepAS–Chemical language model for the extension of active analogue series

A Yoshimori, J Bajorath - Bioorganic & Medicinal Chemistry, 2022 - Elsevier
In medicinal chemistry, hit-to-lead and lead optimization efforts produce analogue series
(ASs), the analysis of which is of central relevance for the exploration and exploitation of …

MAC-ErrorReads: machine learning-assisted classifier for filtering erroneous NGS reads

A Sami, S El-Metwally, MZ Rashad - BMC bioinformatics, 2024 - Springer
Background The rapid advancement of next-generation sequencing (NGS) machines in
terms of speed and affordability has led to the generation of a massive amount of biological …

Sample Efficient Bayesian Learning of Causal Graphs from Interventions

Z Zhou, MQ Elahi, M Kocaoglu - ar** Bioanalytical Methods to Sequence the Guanine Oxidation Product 8-Oxo-7, 8-Dihydroguanine in RNA
NJ Mathewson - 2022 - search.proquest.com
RNA is susceptible to oxidative damage caused by reactive oxygen species (ROS).
Exposure to ROS can result in modifications to RNA. My interests lie in guanine (G) oxidative …