Transcriptional Regulation in Saccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and …

S Hahn, ET Young - Genetics, 2011 - academic.oup.com
Here we review recent advances in understanding the regulation of mRNA synthesis in
Saccharomyces cerevisiae. Many fundamental gene regulatory mechanisms have been …

Promoter engineering: recent advances in controlling transcription at the most fundamental level

J Blazeck, HS Alper - Biotechnology journal, 2013 - Wiley Online Library
Synthetic control of gene expression is critical for metabolic engineering efforts. Specifically,
precise control of key pathway enzymes (heterologous or native) can help maximize product …

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts

PT Monteiro, J Oliveira, P Pais, M Antunes… - Nucleic acids …, 2020 - academic.oup.com
The YEASTRACT+ information system (http://YEASTRACT-PLUS. org/) is a wide-scope tool
for the analysis and prediction of transcription regulatory associations at the gene and …

YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis

MC Teixeira, R Viana, M Palma, J Oliveira… - Nucleic acids …, 2023 - academic.oup.com
Abstract YEASTRACT+ (http://yeastract-plus. org/) is a tool for the analysis, prediction and
modelling of transcription regulatory data at the gene and genomic levels in yeasts. It …

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae

MC Teixeira, PT Monteiro, M Palma… - Nucleic acids …, 2018 - academic.oup.com
Abstract The YEAst Search for Transcriptional Regulators And Consensus Tracking
(YEASTRACT—www. yeastract. com) information system has been, for 11 years, a key tool …

DNA damage-induced reactive oxygen species (ROS) stress response in Saccharomyces cerevisiae

LA Rowe, N Degtyareva, PW Doetsch - Free Radical Biology and Medicine, 2008 - Elsevier
Cells are exposed to both endogenous and exogenous sources of reactive oxygen species
(ROS). At high levels, ROS can lead to impaired physiological function through cellular …

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae

MC Teixeira, PT Monteiro, JF Guerreiro… - Nucleic acids …, 2014 - academic.oup.com
Abstract The YEASTRACT (http://www. yeastract. com) information system is a tool for the
analysis and prediction of transcription regulatory associations in Saccharomyces …

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

J Gertz, ED Siggia, BA Cohen - Nature, 2009 - nature.com
Transcription factor binding sites are being discovered at a rapid pace,. It is now necessary
to turn attention towards understanding how these sites work in combination to influence …

Statistical inference of the time-varying structure of gene-regulation networks

S Lebre, J Becq, F Devaux, MPH Stumpf… - BMC systems …, 2010 - Springer
Background Biological networks are highly dynamic in response to environmental and
physiological cues. This variability is in contrast to conventional analyses of biological …

Large‐scale 13C‐flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

BRB Haverkorn van Rijsewijk, A Nanchen… - Molecular systems …, 2011 - embopress.org
Despite our increasing topological knowledge on regulation networks in model bacteria, it is
largely unknown which of the many co‐occurring regulatory events actually control …