Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them
RNA molecules can fold into intricate shapes that can provide an additional layer of control
of gene expression beyond that of their sequence. In this Review, we discuss the current …
of gene expression beyond that of their sequence. In this Review, we discuss the current …
The roles of structural dynamics in the cellular functions of RNAs
RNAs fold into 3D structures that range from simple helical elements to complex tertiary
structures and quaternary ribonucleoprotein assemblies. The functions of many regulatory …
structures and quaternary ribonucleoprotein assemblies. The functions of many regulatory …
Regulation by 3′-untranslated regions
C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …
Sequence, structure, and context preferences of human RNA binding proteins
D Dominguez, P Freese, MS Alexis, A Su, M Hochman… - Molecular cell, 2018 - cell.com
RNA binding proteins (RBPs) orchestrate the production, processing, and function of
mRNAs. Here, we present the affinity landscapes of 78 human RBPs using an unbiased …
mRNAs. Here, we present the affinity landscapes of 78 human RBPs using an unbiased …
POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins
W Zhao, S Zhang, Y Zhu, X **, P Bao, Z Ma… - Nucleic Acids …, 2022 - academic.oup.com
RNA-binding proteins (RBPs) play key roles in post-transcriptional regulation. Accurate
identification of RBP binding sites in multiple cell lines and tissue types from diverse species …
identification of RBP binding sites in multiple cell lines and tissue types from diverse species …
RNA modifications and structures cooperate to guide RNA–protein interactions
CJT Lewis, T Pan, A Kalsotra - Nature reviews Molecular cell biology, 2017 - nature.com
An emerging body of evidence indicates that post-transcriptional gene regulation relies not
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
only on the sequence of mRNAs but also on their folding into intricate secondary structures …
RNA conformational propensities determine cellular activity
Cellular processes are the product of interactions between biomolecules, which associate to
form biologically active complexes. These interactions are mediated by intermolecular …
form biologically active complexes. These interactions are mediated by intermolecular …
Alternative RNA structures formed during transcription depend on elongation rate and modify RNA processing
T Saldi, K Riemondy, B Erickson, DL Bentley - Molecular cell, 2021 - cell.com
Most RNA processing occurs co-transcriptionally. We interrogated nascent pol II transcripts
by chemical and enzymatic probing and determined how the" nascent RNA structureome" …
by chemical and enzymatic probing and determined how the" nascent RNA structureome" …
FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex RNA sequences
The sorting of RNA molecules to subcellular locations facilitates the activity of spatially
restricted processes. We have analyzed subcellular transcriptomes of FMRP-null mouse …
restricted processes. We have analyzed subcellular transcriptomes of FMRP-null mouse …
A new lens for RNA localization: liquid-liquid phase separation
EM Langdon, AS Gladfelter - Annual Review of Microbiology, 2018 - annualreviews.org
RNA localization mechanisms have been intensively studied and include localized
protection of mRNA from degradation, diffusion-coupled local entrapment of mRNA, and …
protection of mRNA from degradation, diffusion-coupled local entrapment of mRNA, and …