[HTML][HTML] Network resilience

X Liu, D Li, M Ma, BK Szymanski, HE Stanley, J Gao - Physics Reports, 2022 - Elsevier
Many systems on our planet shift abruptly and irreversibly from the desired state to an
undesired state when forced across a “tip** point”. Some examples are mass extinctions …

Predictive biology: modelling, understanding and harnessing microbial complexity

AJ Lopatkin, JJ Collins - Nature Reviews Microbiology, 2020 - nature.com
Predictive biology is the next great chapter in synthetic and systems biology, particularly for
microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …

Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER

BG Wong, CP Mancuso, S Kiriakov, CJ Bashor… - Nature …, 2018 - nature.com
Precise control over microbial cell growth conditions could enable detection of minute
phenotypic changes, which would improve our understanding of how genotypes are shaped …

Robust, linear correlations between growth rates and β-lactam–mediated lysis rates

AJ Lee, S Wang, HR Meredith, B Zhuang, Z Dai… - Proceedings of the …, 2018 - pnas.org
It is widely acknowledged that faster-growing bacteria are killed faster by β-lactam
antibiotics. This notion serves as the foundation for the concept of bacterial persistence …

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

S Klumpp, T Hwa - Current opinion in biotechnology, 2014 - Elsevier
Highlights•Genes and genetic circuits exhibit growth-rate dependence.•Growth rate
dependence reflects coupling of gene expression and physiological state of the cell.•Several …

Phenotypic heterogeneity promotes adaptive evolution

Z Bódi, Z Farkas, D Nevozhay, D Kalapis, V Lázár… - PLoS …, 2017 - journals.plos.org
Genetically identical cells frequently display substantial heterogeneity in gene expression,
cellular morphology and physiology. It has been suggested that by rapidly generating a …

Unraveling non-genetic heterogeneity in cancer with dynamical models and computational tools

M Pillai, E Hojel, MK Jolly, Y Goyal - Nature Computational Science, 2023 - nature.com
Individual cells within an otherwise genetically homogenous population constantly undergo
fluctuations in their molecular state, giving rise to non-genetic heterogeneity. Such diversity …

Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance

NM Vega, KR Allison, AN Samuels… - Proceedings of the …, 2013 - pnas.org
Bacterial communication plays an important role in many population-based phenotypes and
interspecies interactions, including those in host environments. These interspecies …

Phenotypic switching in gene regulatory networks

P Thomas, N Popović, R Grima - Proceedings of the National Academy of …, 2014 - pnas.org
Noise in gene expression can lead to reversible phenotypic switching. Several experimental
studies have shown that the abundance distributions of proteins in a population of isogenic …

Role of network-mediated stochasticity in mammalian drug resistance

KS Farquhar, DA Charlebois, M Szenk, J Cohen… - Nature …, 2019 - nature.com
A major challenge in biology is that genetically identical cells in the same environment can
display gene expression stochasticity (noise), which contributes to bet-hedging, drug …