Recent advances in deep learning for protein-protein interaction analysis: A comprehensive review

M Lee - Molecules, 2023 - mdpi.com
Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative
imprint across multiple disciplines. Within computational biology, it is expediting progress in …

[PDF][PDF] Identification of Triple Negative Breast Cancer Genes Using Rough Set Based Feature Selection Algorithm & Ensemble Classifier

S Patil, KR Balmuri, J Frnda… - … -centric computing and …, 2022 - hcisj.com
In recent decades, microarray datasets have played an important role in triple negative
breast cancer (TNBC) detection. Microarray data classification is a challenging process due …

Deciphering ligand–receptor-mediated intercellular communication based on ensemble deep learning and the joint scoring strategy from single-cell transcriptomic …

L Peng, J Tan, W **ong, L Zhang, Z Wang… - Computers in Biology …, 2023 - Elsevier
Background: Cell–cell communication in a tumor microenvironment is vital to tumorigenesis,
tumor progression and therapy. Intercellular communication inference helps understand …

CellDialog: A Computational Framework for Ligand-receptor-mediated Cell-cell Communication Analysis III

L Peng, W **ong, C Han, Z Li… - IEEE Journal of …, 2023 - ieeexplore.ieee.org
Intercellularcommunication significantly influences tumor progression, metastasis, and
therapy resistance. An intercellular communication inference method includes two main …

Machine Learning Advances in Predicting Peptide/Protein‐Protein Interactions Based on Sequence Information for Lead Peptides Discovery

J Ye, A Li, H Zheng, B Yang, Y Lu - Advanced Biology, 2023 - Wiley Online Library
Peptides have shown increasing advantages and significant clinical value in drug discovery
and development. With the development of high‐throughput technologies and artificial …

Identifying potential ligand–receptor interactions based on gradient boosted neural network and interpretable boosting machine for intercellular communication …

L Peng, P Gao, W **ong, Z Li, X Chen - Computers in Biology and Medicine, 2024 - Elsevier
Cell–cell communication is essential to many key biological processes. Intercellular
communication is generally mediated by ligand–receptor interactions (LRIs). Thus, building …

Cellenboost: a boosting-based ligand-receptor interaction identification model for cell-to-cell communication inference

L Peng, R Yuan, C Han, G Han, J Tan… - IEEE Transactions …, 2023 - ieeexplore.ieee.org
Cell-to-cell communication (CCC) plays important roles in multicellular organisms. The
identification of communication between cancer cells themselves and one between cancer …

[HTML][HTML] MM-StackEns: A new deep multimodal stacked generalization approach for protein–protein interaction prediction

AI Albu, MI Bocicor, G Czibula - Computers in Biology and Medicine, 2023 - Elsevier
Accurate in-silico identification of protein–protein interactions (PPIs) is a long-standing
problem in biology, with important implications in protein function prediction and drug …

DCSE: Double-Channel-Siamese-Ensemble model for protein protein interaction prediction

W Chen, S Wang, T Song, X Li, P Han, C Gao - BMC genomics, 2022 - Springer
Background Protein-protein interaction (PPI) is very important for many biochemical
processes. Therefore, accurate prediction of PPI can help us better understand the role of …

Machine learning empowered green task offloading for mobile edge computing in 5G networks

A Kaur, A Godara - IEEE Transactions on Network and Service …, 2023 - ieeexplore.ieee.org
With the exponential growth of computation-intensive and latency-sensitive applications in
5G, it is hard to satisfy the heterogeneous requirements for increased data traffic with limited …