Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Landscape genomics to enable conservation actions: the California Conservation Genomics Project
Abstract The California Conservation Genomics Project (CCGP) is a unique, critically
important step forward in the use of comprehensive landscape genetic data to modernize …
important step forward in the use of comprehensive landscape genetic data to modernize …
Ensembl 2023
FJ Martin, MR Amode, A Aneja… - Nucleic acids …, 2023 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) has produced high-quality genomic resources
for vertebrates and model organisms for more than twenty years. During that time, our …
for vertebrates and model organisms for more than twenty years. During that time, our …
Evolutionary constraint and innovation across hundreds of placental mammals
Zoonomia is the largest comparative genomics resource for mammals produced to date. By
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …
Green plant genomes: What we know in an era of rapidly expanding opportunities
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …
novo genomes are being generated for all known eukaryotic species as advocated by the …
HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome …
Abstract Background Pacific Biosciences HiFi read technology is currently the industry
standard for high accuracy long-read sequencing that has been widely adopted by large …
standard for high accuracy long-read sequencing that has been widely adopted by large …
Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera
Chromosomes are a central unit of genome organization. One-tenth of all described species
on Earth are butterflies and moths, the Lepidoptera, which generally possess 31 …
on Earth are butterflies and moths, the Lepidoptera, which generally possess 31 …
Genomics for monitoring and understanding species responses to global climate change
All life forms across the globe are experiencing drastic changes in environmental conditions
as a result of global climate change. These environmental changes are happening rapidly …
as a result of global climate change. These environmental changes are happening rapidly …
The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …