Approximate Bayesian computation (ABC) in practice

K Csilléry, MGB Blum, OE Gaggiotti… - Trends in ecology & …, 2010 - cell.com
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …

Approximate Bayesian computation in evolution and ecology

MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …

Efficient ancestry and mutation simulation with msprime 1.0

F Baumdicker, G Bisschop, D Goldstein, G Gower… - Genetics, 2022 - academic.oup.com
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …

[BOOK][B] Handbook of approximate Bayesian computation

SA Sisson, Y Fan, M Beaumont - 2018 - books.google.com
As the world becomes increasingly complex, so do the statistical models required to analyse
the challenging problems ahead. For the very first time in a single volume, the Handbook of …

[BOOK][B] Bayesian statistics

PM Lee - 1989 - york.ac.uk
Bayesian Statistics: Page 1 Bayesian Statistics: An Introduction PETER M. LEE Formerly Provost
of Wentworth College, University of York, England Fourth Edition John Wiley & Sons, Ltd Page …

Benchmarking simulation-based inference

JM Lueckmann, J Boelts, D Greenberg… - International …, 2021 - proceedings.mlr.press
Recent advances in probabilistic modelling have led to a large number of simulation-based
inference algorithms which do not require numerical evaluation of likelihoods. However, a …

Supervised machine learning for population genetics: a new paradigm

DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …

Approximate Bayesian computational methods

JM Marin, P Pudlo, CP Robert, RJ Ryder - Statistics and computing, 2012 - Springer
Abstract Approximate Bayesian Computation (ABC) methods, also known as likelihood-free
techniques, have appeared in the past ten years as the most satisfactory approach to …

Automatic posterior transformation for likelihood-free inference

D Greenberg, M Nonnenmacher… - … on Machine Learning, 2019 - proceedings.mlr.press
How can one perform Bayesian inference on stochastic simulators with intractable
likelihoods? A recent approach is to learn the posterior from adaptively proposed …

Approximate bayesian computation

M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …