Soil microbiomes and one health

S Banerjee, MGA Van Der Heijden - Nature Reviews Microbiology, 2023 - nature.com
The concept of one health highlights that human health is not isolated but connected to the
health of animals, plants and environments. In this Review, we demonstrate that soils are a …

A practical guide to amplicon and metagenomic analysis of microbiome data

YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo… - Protein & cell, 2021 - academic.oup.com
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …

[책][B] Entangled life: How fungi make our worlds, change our minds & shape our futures

M Sheldrake - 2021 - books.google.com
NEW YORK TIMES BESTSELLER• A “brilliant [and] entrancing”(The Guardian) journey into
the hidden lives of fungi—the great connectors of the living world—and their astonishing and …

[HTML][HTML] Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

ND Youngblut, GH Reischer, W Walters… - Nature …, 2019 - nature.com
Multiple factors modulate microbial community assembly in the vertebrate gut, though
studies disagree as to their relative contribution. One cause may be a reliance on captive …

Can we use functional annotation of prokaryotic taxa (FAPROTAX) to assign the ecological functions of soil bacteria?

C Sansupa, SFM Wahdan, S Hossen… - Applied Sciences, 2021 - mdpi.com
FAPROTAX is a promising tool for predicting ecological relevant functions of bacterial and
archaeal taxa derived from 16S rRNA amplicon sequencing. The database was initially …

The host-associated archaeome

G Borrel, JF Brugère, S Gribaldo, RA Schmitz… - Nature Reviews …, 2020 - nature.com
Host-associated microbial communities have an important role in sha** the health and
fitness of plants and animals. Most studies have focused on the bacterial, fungal or viral …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

An introduction to phylosymbiosis

SJ Lim, SR Bordenstein - Proceedings of the Royal …, 2020 - royalsocietypublishing.org
Phylosymbiosis was recently formulated to support a hypothesis-driven framework for the
characterization of a new, cross-system trend in host-associated microbiomes. Defining …

Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species

JJ Minich, A Härer, J Vechinski, BW Frable… - Nature …, 2022 - nature.com
Fish are the most diverse and widely distributed vertebrates, yet little is known about the
microbial ecology of fishes nor the biological and environmental factors that influence fish …

The skin microbiome of vertebrates

AA Ross, A Rodrigues Hoffmann, JD Neufeld - Microbiome, 2019 - Springer
The skin constitutes the primary physical barrier between vertebrates and their external
environment. Characterization of skin microorganisms is essential for understanding how a …