The expanded genetic alphabet
DA Malyshev, FE Romesberg - … Chemie International Edition, 2015 - Wiley Online Library
All biological information, since the last common ancestor of all life on Earth, has been
encoded by a genetic alphabet consisting of only four nucleotides that form two base pairs …
encoded by a genetic alphabet consisting of only four nucleotides that form two base pairs …
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …
Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study
Single-molecule Förster resonance energy transfer (smFRET) is increasingly being used to
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However …
determine distances, structures, and dynamics of biomolecules in vitro and in vivo. However …
Structural basis for processive daughter-strand synthesis and proofreading by the human leading-strand DNA polymerase Pol ε
JJ Roske, JTP Yeeles - Nature Structural & Molecular Biology, 2024 - nature.com
During chromosome replication, the nascent leading strand is synthesized by DNA
polymerase epsilon (Pol ε), which associates with the sliding clamp processivity factor …
polymerase epsilon (Pol ε), which associates with the sliding clamp processivity factor …
Alternating-laser excitation: single-molecule FRET and beyond
The alternating-laser excitation (ALEX) scheme continues to expand the possibilities of
fluorescence-based assays to study biological entities and interactions. Especially the …
fluorescence-based assays to study biological entities and interactions. Especially the …
Multidomain structure and correlated dynamics determined by self-consistent FRET networks
We present an approach that enables us to simultaneously access structure and dynamics
of a multidomain protein in solution. Dynamic domain arrangements are experimentally …
of a multidomain protein in solution. Dynamic domain arrangements are experimentally …
The conformational dynamics of Cas9 governing DNA cleavage are revealed by single-molecule FRET
Off-target binding and cleavage by Cas9 pose major challenges in its application. How the
conformational dynamics of Cas9 govern its nuclease activity under on-and off-target …
conformational dynamics of Cas9 govern its nuclease activity under on-and off-target …
Polγ coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity
J Park, GK Herrmann, PG Mitchell… - Nature structural & …, 2023 - nature.com
Accurate replication of mitochondrial DNA (mtDNA) by DNA polymerase γ (Polγ) is essential
for maintaining cellular energy supplies, metabolism, and cell cycle control. To illustrate the …
for maintaining cellular energy supplies, metabolism, and cell cycle control. To illustrate the …
Label-free optical detection of single enzyme-reactant reactions and associated conformational changes
Monitoring the kinetics and conformational dynamics of single enzymes is crucial to better
understand their biological functions because these motions and structural dynamics are …
understand their biological functions because these motions and structural dynamics are …
Engineering polymerases for applications in synthetic biology
A Nikoomanzar, N Chim, EJ Yik… - Quarterly reviews of …, 2020 - cambridge.org
DNA polymerases play a central role in biology by transferring genetic information from one
generation to the next during cell division. Harnessing the power of these enzymes in the …
generation to the next during cell division. Harnessing the power of these enzymes in the …