Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Microsatellites: simple sequences with complex evolution

H Ellegren - Nature reviews genetics, 2004 - nature.com
Few genetic markers, if any, have found such widespread use as microsatellites, or
simple/short tandem repeats. Features such as hypervariability and ubiquitous occurrence …

Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

MC Fischer, C Rellstab, M Leuzinger, M Roumet… - BMC genomics, 2017 - Springer
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …

Reliable ABC model choice via random forests

P Pudlo, JM Marin, A Estoup, JM Cornuet… - …, 2016 - academic.oup.com
Abstract Motivation: Approximate Bayesian computation (ABC) methods provide an
elaborate approach to Bayesian inference on complex models, including model choice. Both …

Genome-wide profiling of heritable and de novo STR variations

T Willems, D Zielinski, J Yuan, A Gordon, M Gymrek… - Nature …, 2017 - nature.com
Short tandem repeats (STRs) are highly variable elements that play a pivotal role in multiple
genetic diseases, population genetics applications, and forensic casework. However, it has …

Microsatellite null alleles and estimation of population differentiation

MP Chapuis, A Estoup - Molecular biology and evolution, 2007 - academic.oup.com
Microsatellite null alleles are commonly encountered in population genetics studies, yet little
is known about their impact on the estimation of population differentiation. Computer …

Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants

H Nybom - Molecular ecology, 2004 - Wiley Online Library
A compilation was made of 307 studies using nuclear DNA markers for evaluating among‐
and within‐population diversity in wild angiosperms and gymnosperms. Estimates derived …

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

KA Selkoe, RJ Toonen - Ecology letters, 2006 - Wiley Online Library
Recent improvements in genetic analysis and genoty** methods have resulted in a rapid
expansion of the power of molecular markers to address ecological questions …

Status and prospects of association map** in plants

C Zhu, M Gore, ES Buckler, J Yu - The plant genome, 2008 - Wiley Online Library
There is tremendous interest in using association map** to identify genes responsible for
quantitative variation of complex traits with agricultural and evolutionary importance. Recent …

Reconstructing routes of invasion using genetic data: why, how and so what?

A Estoup, T Guillemaud - Molecular ecology, 2010 - Wiley Online Library
Detailed knowledge about the geographical pathways followed by propagules from their
source to the invading populations—referred to here as routes of invasion—provides …