Limitations and pitfalls in protein identification by mass spectrometry

G Lubec, L Afjehi-Sadat - Chemical reviews, 2007 - ACS Publications
The advent of proteomics techniques for protein identification (PrI) represented a major step
forward in protein chemistry, 1, 2 and indeed, a legion of laboratories are now using different …

Software tool for researching annotations of proteins: open-source protein annotation software with data visualization

VN Bhatia, DH Perlman, CE Costello… - Analytical …, 2009 - ACS Publications
In order that biological meaning may be derived and testable hypotheses may be built from
proteomics experiments, assignments of proteins identified by mass spectrometry or other …

Protein annotation at genomic scale: the current status

D Frishman - Chemical reviews, 2007 - ACS Publications
Genomic sequences are being deciphered at an unprecedented pace, and the demand for
sequence data is also continuously growing, fuelled by thrilling potential applications which …

ClanTox: a classifier of short animal toxins

G Naamati, M Askenazi, M Linial - Nucleic acids research, 2009 - academic.oup.com
Toxins are detected in sporadic species along the evolutionary tree of the animal kingdom.
Venomous animals include scorpions, snakes, bees, wasps, frogs and numerous animals …

A proteomic survey of rat cerebral cortical synaptosomes

FA Witzmann, RJ Arnold, F Bai, P Hrncirova… - …, 2005 - Wiley Online Library
Previous findings from our laboratory and others indicate that two‐dimensional gel
electrophoresis (2‐DE) can be used to study protein expression in defined brain regions, but …

Global characterization of porcine intrauterine proteins during early pregnancy

JPR Kayser, JG Kim, RL Cerny, JL Vallet - Reproduction, 2006 - rep.bioscientifica.com
Total protein secreted in the intrauterine lumen increases between day 10 and 13 post-
estrus in both cyclic and pregnant gilts. The objective of this experiment was to identify those …

ProtoNet 4.0: a hierarchical classification of one million protein sequences

N Kaplan, O Sasson, U Inbar, M Friedlich… - Nucleic acids …, 2005 - academic.oup.com
ProtoNet is an automatic hierarchical classification of the protein sequence space. In 2004,
the ProtoNet (version 4.0) presents the analysis of over one million proteins merged from …

A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks

Q Yang, S Lonardi - International Journal of Data Mining …, 2007 - inderscienceonline.com
The increasing availability of protein-protein interaction graphs (PPI) requires new efficient
tools capable of extracting valuable biological knowledge from these networks. Among the …

Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology

S Mangiola, ND Young, P Korhonen, A Mondal… - Biotechnology …, 2013 - Elsevier
Compounded by a massive global food shortage, many parasitic diseases have a
devastating, long-term impact on animal and human health and welfare worldwide. Parasitic …

[PDF][PDF] Mass spectrometry for protein identification and the study of post translational modifications

AM Salzano, M Crescenzi - Ann Ist Super Sanita, 2005 - chibi.ubc.ca
Mass spectrometry is a powerful tool for the structural characterization of proteins. The
development of a large number of analytical strategies based on different mass …