Limitations and pitfalls in protein identification by mass spectrometry
G Lubec, L Afjehi-Sadat - Chemical reviews, 2007 - ACS Publications
The advent of proteomics techniques for protein identification (PrI) represented a major step
forward in protein chemistry, 1, 2 and indeed, a legion of laboratories are now using different …
forward in protein chemistry, 1, 2 and indeed, a legion of laboratories are now using different …
Software tool for researching annotations of proteins: open-source protein annotation software with data visualization
In order that biological meaning may be derived and testable hypotheses may be built from
proteomics experiments, assignments of proteins identified by mass spectrometry or other …
proteomics experiments, assignments of proteins identified by mass spectrometry or other …
Protein annotation at genomic scale: the current status
D Frishman - Chemical reviews, 2007 - ACS Publications
Genomic sequences are being deciphered at an unprecedented pace, and the demand for
sequence data is also continuously growing, fuelled by thrilling potential applications which …
sequence data is also continuously growing, fuelled by thrilling potential applications which …
ClanTox: a classifier of short animal toxins
G Naamati, M Askenazi, M Linial - Nucleic acids research, 2009 - academic.oup.com
Toxins are detected in sporadic species along the evolutionary tree of the animal kingdom.
Venomous animals include scorpions, snakes, bees, wasps, frogs and numerous animals …
Venomous animals include scorpions, snakes, bees, wasps, frogs and numerous animals …
A proteomic survey of rat cerebral cortical synaptosomes
FA Witzmann, RJ Arnold, F Bai, P Hrncirova… - …, 2005 - Wiley Online Library
Previous findings from our laboratory and others indicate that two‐dimensional gel
electrophoresis (2‐DE) can be used to study protein expression in defined brain regions, but …
electrophoresis (2‐DE) can be used to study protein expression in defined brain regions, but …
Global characterization of porcine intrauterine proteins during early pregnancy
JPR Kayser, JG Kim, RL Cerny, JL Vallet - Reproduction, 2006 - rep.bioscientifica.com
Total protein secreted in the intrauterine lumen increases between day 10 and 13 post-
estrus in both cyclic and pregnant gilts. The objective of this experiment was to identify those …
estrus in both cyclic and pregnant gilts. The objective of this experiment was to identify those …
ProtoNet 4.0: a hierarchical classification of one million protein sequences
N Kaplan, O Sasson, U Inbar, M Friedlich… - Nucleic acids …, 2005 - academic.oup.com
ProtoNet is an automatic hierarchical classification of the protein sequence space. In 2004,
the ProtoNet (version 4.0) presents the analysis of over one million proteins merged from …
the ProtoNet (version 4.0) presents the analysis of over one million proteins merged from …
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
Q Yang, S Lonardi - International Journal of Data Mining …, 2007 - inderscienceonline.com
The increasing availability of protein-protein interaction graphs (PPI) requires new efficient
tools capable of extracting valuable biological knowledge from these networks. Among the …
tools capable of extracting valuable biological knowledge from these networks. Among the …
Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology
Compounded by a massive global food shortage, many parasitic diseases have a
devastating, long-term impact on animal and human health and welfare worldwide. Parasitic …
devastating, long-term impact on animal and human health and welfare worldwide. Parasitic …
[PDF][PDF] Mass spectrometry for protein identification and the study of post translational modifications
Mass spectrometry is a powerful tool for the structural characterization of proteins. The
development of a large number of analytical strategies based on different mass …
development of a large number of analytical strategies based on different mass …