Illuminating the oral microbiome and its host interactions: recent advancements in omics and bioinformatics technologies in the context of oral microbiome research
JL Baker - FEMS Microbiology Reviews, 2023 - academic.oup.com
The oral microbiota has an enormous impact on human health, with oral dysbiosis now
linked to many oral and systemic diseases. Recent advancements in sequencing, mass …
linked to many oral and systemic diseases. Recent advancements in sequencing, mass …
Computational approaches to enzyme inhibition by marine natural products in the search for new drugs
F Gago - Marine Drugs, 2023 - mdpi.com
The exploration of biologically relevant chemical space for the discovery of small bioactive
molecules present in marine organisms has led not only to important advances in certain …
molecules present in marine organisms has led not only to important advances in certain …
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic Acids Research, 2023 - academic.oup.com
Abstract The 2023 Nucleic Acids Research Database Issue contains 178 papers ranging
across biology and related fields. There are 90 papers reporting on new databases and 82 …
across biology and related fields. There are 90 papers reporting on new databases and 82 …
[HTML][HTML] Antifungal activity of Lactiplantibacillus plantarum isolated from fruit and vegetables and detection of novel antifungal VOCs from fungal-LAB co-cultures
N De Simone, L López, CS Ciudad, A Scauro, P Russo… - Food Bioscience, 2024 - Elsevier
Undesired microbiota, such as filamentous fungi, negatively impacts the food sector leading
to huge losses of food produce. For this reason, preservatives are often used to reduce …
to huge losses of food produce. For this reason, preservatives are often used to reduce …
Integrating biological knowledge for mechanistic inference in the host-associated microbiome
BE Santangelo, M Apgar, ASB Colorado… - Frontiers in …, 2024 - frontiersin.org
Advances in high-throughput technologies have enhanced our ability to describe microbial
communities as they relate to human health and disease. Alongside the growth in …
communities as they relate to human health and disease. Alongside the growth in …
The Natural Products Magnetic Resonance Database (NP-MRD) for 2025
Abstract The Natural Products Magnetic Resonance Database (NP-MRD; https://np-mrd.
org) is a comprehensive, freely accessible, web-based resource for the deposition …
org) is a comprehensive, freely accessible, web-based resource for the deposition …
Mining patents with large language models demonstrates congruence of functional labels and chemical structures
Predicting chemical function from structure is a major goal of the chemical sciences, from the
discovery and repurposing of novel drugs to the creation of new materials. Recently, new …
discovery and repurposing of novel drugs to the creation of new materials. Recently, new …
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey
The integration of biomolecular modeling with natural language (BL) has emerged as a
promising interdisciplinary area at the intersection of artificial intelligence, chemistry and …
promising interdisciplinary area at the intersection of artificial intelligence, chemistry and …
Promises and Perils of Big Data: Philosophical Constraints on Chemical Ontologies
Chemistry is experiencing a paradigm shift in the way it interacts with data. So-called “big
data” are collected and used at unprecedented scales with the idea that algorithms can be …
data” are collected and used at unprecedented scales with the idea that algorithms can be …
Mining patents with large language models elucidates the chemical function landscape
The fundamental goal of small molecule discovery is to generate chemicals with target
functionality. While this often proceeds through structure-based methods, we set out to …
functionality. While this often proceeds through structure-based methods, we set out to …