RNA-Seq: a revolutionary tool for transcriptomics

Z Wang, M Gerstein, M Snyder - Nature reviews genetics, 2009 - nature.com
RNA-Seq is a recently developed approach to transcriptome profiling that uses deep-
sequencing technologies. Studies using this method have already altered our view of the …

[HTML][HTML] Structure and function of claudins

G Krause, L Winkler, SL Mueller, RF Haseloff… - … et Biophysica Acta (BBA …, 2008 - Elsevier
Claudins are tetraspan transmembrane proteins of tight junctions. They determine the
barrier properties of this type of cell–cell contact existing between the plasma membranes of …

The NCATS BioPlanet–an integrated platform for exploring the universe of cellular signaling pathways for toxicology, systems biology, and chemical genomics

R Huang, I Grishagin, Y Wang, T Zhao… - Frontiers in …, 2019 - frontiersin.org
Chemical genomics aims to comprehensively define, and ultimately predict, the effects of
small molecule compounds on biological systems. Chemical activity profiling approaches …

[HTML][HTML] Thousands of exon skip** events differentiate among splicing patterns in sixteen human tissues

L Florea, L Song, SL Salzberg - F1000Research, 2013 - ncbi.nlm.nih.gov
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. However, despite many efforts, the repertoire of gene splicing variation is still …

Map** and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, BA Williams, K McCue, L Schaeffer… - Nature …, 2008 - nature.com
We have mapped and quantified mouse transcriptomes by deeply sequencing them and
recording how frequently each gene is represented in the sequence sample (RNA-Seq) …

The UCSC genome browser database: update 2006

AS Hinrichs, D Karolchik, R Baertsch… - Nucleic acids …, 2006 - academic.oup.com
Abstract The University of California Santa Cruz Genome Browser Database (GBD) contains
sequence and annotation data for the genomes of about a dozen vertebrate species and …

The UCSC genome browser database: update 2011

PA Fujita, B Rhead, AS Zweig, AS Hinrichs… - Nucleic acids …, 2010 - academic.oup.com
Abstract The University of California, Santa Cruz Genome Browser (http://genome. ucsc.
edu) offers online access to a database of genomic sequence and annotation data for a …

The unfolded protein response governs integrity of the haematopoietic stem-cell pool during stress

P van Galen, A Kreso, N Mbong, DG Kent… - Nature, 2014 - nature.com
The blood system is sustained by a pool of haematopoietic stem cells (HSCs) that are long-
lived due to their capacity for self-renewal. A consequence of longevity is exposure to stress …

Expression system for structural and functional studies of human glycosylation enzymes

KW Moremen, A Ramiah, M Stuart, J Steel… - Nature chemical …, 2018 - nature.com
Vertebrate glycoproteins and glycolipids are synthesized in complex biosynthetic pathways
localized predominantly within membrane compartments of the secretory pathway. The …

Specific expression of long noncoding RNAs in the mouse brain

TR Mercer, ME Dinger, SM Sunkin… - Proceedings of the …, 2008 - National Acad Sciences
A major proportion of the mammalian transcriptome comprises long RNAs that have little or
no protein-coding capacity (ncRNAs). Only a handful of such transcripts have been …