Sequential monte carlo: A unified review

AG Wills, TB Schön - Annual Review of Control, Robotics, and …, 2023 - annualreviews.org
Sequential Monte Carlo methods—also known as particle filters—offer approximate
solutions to filtering problems for nonlinear state-space systems. These filtering problems …

An invitation to sequential Monte Carlo samplers

C Dai, J Heng, PE Jacob, N Whiteley - Journal of the American …, 2022 - Taylor & Francis
ABSTRACT Statisticians often use Monte Carlo methods to approximate probability
distributions, primarily with Markov chain Monte Carlo and importance sampling. Sequential …

Approximate leave-future-out cross-validation for Bayesian time series models

PC Bürkner, J Gabry, A Vehtari - Journal of Statistical Computation …, 2020 - Taylor & Francis
One of the common goals of time series analysis is to use the observed series to inform
predictions for future observations. In the absence of any actual new data to predict, cross …

Probabilistic programs as an action description language

RI Brafman, D Tolpin, O Wertheim - … of the AAAI Conference on Artificial …, 2023 - ojs.aaai.org
Actions description languages (ADLs), such as STRIPS, PDDL, and RDDL specify the input
format for planning algorithms. Unfortunately, their syntax is familiar to planning experts only …

Optimizing insect metabarcoding using replicated mock communities

E Iwaszkiewicz‐Eggebrecht, E Granqvist… - Methods in ecology …, 2023 - Wiley Online Library
Metabarcoding (high‐throughput sequencing of marker gene amplicons) has emerged as a
promising and cost‐effective method for characterizing insect community samples. Yet, the …

Smcp3: Sequential monte carlo with probabilistic program proposals

AK Lew, G Matheos, T Zhi-Xuan… - International …, 2023 - proceedings.mlr.press
This paper introduces SMCP3, a method for automatically implementing custom sequential
Monte Carlo samplers for inference in probabilistic programs. Unlike particle filters and …

Universal probabilistic programming offers a powerful approach to statistical phylogenetics

F Ronquist, J Kudlicka, V Senderov… - Communications …, 2021 - nature.com
Statistical phylogenetic analysis currently relies on complex, dedicated software packages,
making it difficult for evolutionary biologists to explore new models and inference strategies …

Structural foundations for probabilistic programming languages

DM Stein - 2021 - ora.ox.ac.uk
Probability theory and statistics are fundamental disciplines in a data-driven world. Synthetic
probability theory is a general, axiomatic formalism to describe their underlying structures …

Affine monads and lazy structures for Bayesian programming

S Dash, Y Kaddar, H Paquet, S Staton - Proceedings of the ACM on …, 2023 - dl.acm.org
We show that streams and lazy data structures are a natural idiom for programming with
infinite-dimensional Bayesian methods such as Poisson processes, Gaussian processes …

Past, Present and Future of Software for Bayesian Inference

E Štrumbelj, A Bouchard-Côté, J Corander… - Statistical …, 2024 - projecteuclid.org
Software tools for Bayesian inference have undergone rapid evolution in the past three
decades, following popularisation of the first generation MCMC-sampler implementations …