The goldmine of GWAS summary statistics: a systematic review of methods and tools

PI Kontou, PG Bagos - BioData Mining, 2024 - Springer
Genome-wide association studies (GWAS) have revolutionized our understanding of the
genetic architecture of complex traits and diseases. GWAS summary statistics have become …

Mendelian randomization analysis reveals a complex genetic interplay among atopic dermatitis, asthma, and gastroesophageal reflux disease

K Ahn, RB Penn, S Rattan, RA Panettieri Jr… - American journal of …, 2023 - atsjournals.org
Rationale: Gastroesophageal reflux disease (GERD) is commonly associated with atopic
disorders, but cause–effect relationships remain unclear. Objectives: We applied Mendelian …

A practical problem with Egger regression in Mendelian randomization

Z Lin, I Pan, W Pan - PLoS genetics, 2022 - journals.plos.org
Mendelian randomization (MR) is an instrumental variable (IV) method using genetic
variants such as single nucleotide polymorphisms (SNPs) as IVs to disentangle the causal …

Combining Mendelian randomization and network deconvolution for inference of causal networks with GWAS summary data

Z Lin, H Xue, W Pan - PLoS genetics, 2023 - journals.plos.org
Mendelian randomization (MR) has been increasingly applied for causal inference with
observational data by using genetic variants as instrumental variables (IVs). However, the …

Omega-3 polyunsaturated fatty acids as a protective factor for myopia

CC Xue, H Li, XX Dong, M Yu, Z Da Soh… - American Journal of …, 2024 - Elsevier
Purpose Animal models suggest omega-3 polyunsaturated fatty acids (PUFAs) may protect
against myopia by modulating choroidal blood perfusion, but clinical evidence is scarce and …

MRSL: a causal network pruning algorithm based on GWAS summary data

L Hou, Z Geng, Z Yuan, X Shi, C Wang… - Briefings in …, 2024 - academic.oup.com
Causal discovery is a powerful tool to disclose underlying structures by analyzing purely
observational data. Genetic variants can provide useful complementary information for …

Inference of causal metabolite networks in the presence of invalid instrumental variables with GWAS summary data

S Chen, Z Lin, X Shen, L Li, W Pan - Genetic epidemiology, 2023 - Wiley Online Library
We propose structural equation models (SEMs) as a general framework to infer causal
networks for metabolites and other complex traits. Traditionally SEMs are used only for …

Identification and Estimation of the Bi-Directional MR with Some Invalid Instruments

F **e, Z Yao, L **e, Y Zeng, Z Geng - arxiv preprint arxiv:2407.07933, 2024 - arxiv.org
We consider the challenging problem of estimating causal effects from purely observational
data in the bi-directional Mendelian randomization (MR), where some invalid instruments, as …

Discovery and inference of possibly bi-directional causal relationships with invalid instrumental variables

W Li, R Duan, S Li - arxiv preprint arxiv:2407.11646, 2024 - arxiv.org
Learning causal relationships between pairs of complex traits from observational studies is
of great interest across various scientific domains. However, most existing methods assume …

Robust Mendelian Randomization Methods Based on Constrained Maximum Likelihood for Causal Inference

Z Lin - 2023 - search.proquest.com
Mendelian randomization (MR) has been increasingly applied for causal inference among
traits, eg between potential risk factors and diseases, with observational data by using …