Computer-aided drug design, quantum-mechanical methods for biological problems

M Manathunga, AW Götz, KM Merz Jr - Current Opinion in Structural …, 2022 - Elsevier
Quantum chemistry enables to study systems with chemical accuracy (< 1 kcal/mol from
experiment) but is restricted to a handful of atoms due to its computational expense. This has …

The general atomic and molecular electronic structure system (GAMESS): novel methods on novel architectures

F Zahariev, P Xu, BM Westheimer, S Webb… - Journal of Chemical …, 2023 - ACS Publications
The primary focus of GAMESS over the last 5 years has been the development of new high-
performance codes that are able to take effective and efficient advantage of the most …

Interactive quantum chemistry enabled by machine learning, graphical processing units, and cloud computing

U Raucci, H Weir, S Sakshuwong… - Annual Review of …, 2023 - annualreviews.org
Modern quantum chemistry algorithms are increasingly able to accurately predict molecular
properties that are useful for chemists in research and education. Despite this progress …

Quantum mechanics/molecular mechanics simulations on NVIDIA and AMD graphics processing units

M Manathunga, HM Aktulga, AW Götz… - Journal of Chemical …, 2023 - ACS Publications
We have ported and optimized the graphics processing unit (GPU)-accelerated QUICK and
AMBER-based ab initio quantum mechanics/molecular mechanics (QM/MM) implementation …

Advanced techniques for high-performance fock matrix construction on gpu clusters

E Palethorpe, R Stocks, GMJ Barca - Journal of Chemical Theory …, 2024 - ACS Publications
This Article presents two optimized multi-GPU algorithms for Fock matrix construction,
building on the work of Ufimtsev and Martinez [J. Chem. Theory Comput. 2009, 5, 1004 …

[HTML][HTML] Roadmap on electronic structure codes in the exascale era

V Gavini, S Baroni, V Blum, DR Bowler… - … and Simulation in …, 2023 - iopscience.iop.org
Electronic structure calculations have been instrumental in providing many important
insights into a range of physical and chemical properties of various molecular and solid …

Acceleration without disruption: DFT software as a service

F Ju, X Wei, L Huang, AJ Jenkins, L **a… - Journal of Chemical …, 2024 - ACS Publications
Density functional theory (DFT) has been a cornerstone in computational chemistry, physics,
and materials science for decades, benefiting from advancements in computational power …

Extending GPU-accelerated Gaussian integrals in the TeraChem software package to f type orbitals: Implementation and applications

Y Wang, D Hait, KG Johnson, OJ Fajen… - The Journal of …, 2024 - pubs.aip.org
The increasing availability of graphics processing units (GPUs) for scientific computing has
prompted interest in accelerating quantum chemical calculations through their use …

Multi-GPU RI-HF Energies and Analytic Gradients─ Toward High-Throughput Ab Initio Molecular Dynamics

R Stocks, E Palethorpe, GMJ Barca - Journal of Chemical Theory …, 2024 - ACS Publications
This article presents an optimized algorithm and implementation for calculating resolution-of-
the-identity Hartree–Fock (RI-HF) energies and analytic gradients using multiple graphics …

Porting fragmentation methods to graphical processing units using an OpenMP application programming interface: Offloading the Fock build for low angular …

BQ Pham, M Alkan, MS Gordon - Journal of Chemical Theory and …, 2023 - ACS Publications
A framework to offload four-index two-electron repulsion integrals to graphical processing
units (GPUs) using OpenMP is discussed. The method has been applied to the Fock build …