Computer-aided drug design, quantum-mechanical methods for biological problems
Quantum chemistry enables to study systems with chemical accuracy (< 1 kcal/mol from
experiment) but is restricted to a handful of atoms due to its computational expense. This has …
experiment) but is restricted to a handful of atoms due to its computational expense. This has …
The general atomic and molecular electronic structure system (GAMESS): novel methods on novel architectures
The primary focus of GAMESS over the last 5 years has been the development of new high-
performance codes that are able to take effective and efficient advantage of the most …
performance codes that are able to take effective and efficient advantage of the most …
Interactive quantum chemistry enabled by machine learning, graphical processing units, and cloud computing
Modern quantum chemistry algorithms are increasingly able to accurately predict molecular
properties that are useful for chemists in research and education. Despite this progress …
properties that are useful for chemists in research and education. Despite this progress …
Quantum mechanics/molecular mechanics simulations on NVIDIA and AMD graphics processing units
We have ported and optimized the graphics processing unit (GPU)-accelerated QUICK and
AMBER-based ab initio quantum mechanics/molecular mechanics (QM/MM) implementation …
AMBER-based ab initio quantum mechanics/molecular mechanics (QM/MM) implementation …
Advanced techniques for high-performance fock matrix construction on gpu clusters
This Article presents two optimized multi-GPU algorithms for Fock matrix construction,
building on the work of Ufimtsev and Martinez [J. Chem. Theory Comput. 2009, 5, 1004 …
building on the work of Ufimtsev and Martinez [J. Chem. Theory Comput. 2009, 5, 1004 …
[HTML][HTML] Roadmap on electronic structure codes in the exascale era
Electronic structure calculations have been instrumental in providing many important
insights into a range of physical and chemical properties of various molecular and solid …
insights into a range of physical and chemical properties of various molecular and solid …
Acceleration without disruption: DFT software as a service
Density functional theory (DFT) has been a cornerstone in computational chemistry, physics,
and materials science for decades, benefiting from advancements in computational power …
and materials science for decades, benefiting from advancements in computational power …
Extending GPU-accelerated Gaussian integrals in the TeraChem software package to f type orbitals: Implementation and applications
The increasing availability of graphics processing units (GPUs) for scientific computing has
prompted interest in accelerating quantum chemical calculations through their use …
prompted interest in accelerating quantum chemical calculations through their use …
Multi-GPU RI-HF Energies and Analytic Gradients─ Toward High-Throughput Ab Initio Molecular Dynamics
This article presents an optimized algorithm and implementation for calculating resolution-of-
the-identity Hartree–Fock (RI-HF) energies and analytic gradients using multiple graphics …
the-identity Hartree–Fock (RI-HF) energies and analytic gradients using multiple graphics …
Porting fragmentation methods to graphical processing units using an OpenMP application programming interface: Offloading the Fock build for low angular …
A framework to offload four-index two-electron repulsion integrals to graphical processing
units (GPUs) using OpenMP is discussed. The method has been applied to the Fock build …
units (GPUs) using OpenMP is discussed. The method has been applied to the Fock build …