Membrane protein structure, function, and dynamics: a perspective from experiments and theory

Z Cournia, TW Allen, I Andricioaei, B Antonny… - The Journal of …, 2015 - Springer
Membrane proteins mediate processes that are fundamental for the flourishing of biological
cells. Membrane-embedded transporters move ions and larger solutes across membranes; …

Visualization of biomolecular structures: State of the art revisited

B Kozlíková, M Krone, M Falk, N Lindow… - Computer Graphics …, 2017 - Wiley Online Library
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

MegaMol—a prototy** framework for particle-based visualization

S Grottel, M Krone, C Müller, G Reina… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
Visualization applications nowadays not only face increasingly larger datasets, but have to
solve increasingly complex research questions. They often require more than a single …

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

N Nguyen, O Strnad, T Klein, D Luo… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
We present a new technique for the rapid modeling and construction of scientifically
accurate mesoscale biological models. The resulting 3D models are based on a few 2D …

[HTML][HTML] cellVIEW: a tool for illustrative and multi-scale rendering of large biomolecular datasets

M Le Muzic, L Autin, J Parulek… - Eurographics Workshop on …, 2015 - ncbi.nlm.nih.gov
In this article we introduce cellVIEW, a new system to interactively visualize large
biomolecular datasets on the atomic level. Our tool is unique and has been specifically …

CellPAINT: interactive illustration of dynamic mesoscale cellular environments

A Gardner, L Autin, B Barbaro, AJ Olson… - IEEE computer …, 2019 - ieeexplore.ieee.org
CellPAINT allows nonexpert users to create interactive mesoscale illustrations that integrate
a variety of biological data. Like popular digital painting software, scenes are created using …

Illustrative visualization of molecular reactions using omniscient intelligence and passive agents

M Le Muzic, J Parulek, AK Stavrum… - Computer Graphics …, 2014 - Wiley Online Library
In this paper we propose a new type of a particle systems, tailored for illustrative
visualization purposes, in particular for visualizing molecular reactions in biological …

From atoms to cells: Using mesoscale landscapes to construct visual narratives

DS Goodsell, MA Franzen, T Herman - Journal of molecular biology, 2018 - Elsevier
Modeling and visualization of the cellular mesoscale, bridging the nanometer scale of
molecules to the micrometer scale of cells, is being studied by an integrative approach. Data …

Molecular simulations and visualization: introduction and overview

JD Hirst, DR Glowacki, M Baaden - Faraday discussions, 2014 - pubs.rsc.org
Here we provide an introduction and overview of current progress in the field of molecular
simulation and visualization, touching on the following topics:(1) virtual and augmented …

Trends & opportunities in visualization for physiology: A multiscale overview

LA Garrison, I Kolesar, I Viola, H Hauser… - Computer graphics …, 2022 - Wiley Online Library
Combining elements of biology, chemistry, physics, and medicine, the science of human
physiology is complex and multifaceted. In this report, we offer a broad and multiscale …