Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms

Y Jain, LL Godwin, S Joshi, S Mandarapu, T Le… - Nature …, 2023 - nature.com
The development of a reference atlas of the healthy human body requires automated image
segmentation of major anatomical structures across multiple organs based on spatial …

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

K Börner, PD Blood, JC Silverstein, M Ruffalo… - …, 2024 - pmc.ncbi.nlm.nih.gov
The Human BioMolecular Atlas Program (HuBMAP) aims to construct a reference 3D
structural, cellular, and molecular atlas of the healthy adult human body. The HuBMAP Data …

Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data

AD Bueckle, BW Herr, J Hardi, EM Quardokus… - bioRxiv, 2024 - biorxiv.org
The Human Reference Atlas (HRA) for the healthy, adult body is developed by a team of
international, interdisciplinary experts across 20+ consortia. It provides standard …

[HTML][HTML] Functional Tissue Units in the Human Reference Atlas

S Bidanta, K Börner, BW Herr, M Nagy, KS Gustilo… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Functional tissue units (FTUs) form the basic building blocks of organs and are important for
understanding and modeling the healthy physiological function of the organ and changes …

Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys

Y Jain, CL Walsh, E Yagis, S Aslani, S Nandanwar… - …, 2024 - pmc.ncbi.nlm.nih.gov
Efficient algorithms are needed to segment vasculature in new three-dimensional (3D)
medical imaging datasets at scale for a wide range of research and clinical applications …

Data Visualizations That Improve the Segmentation of Medical Images

Y Ju - 2024 - search.proquest.com
As machine learning (ML) models become more complex, their internal logic becomes more
difficult to understand and optimize. This poses significant challenges for ML training …