Development and use of molecular markers: past and present

A Grover, PC Sharma - Critical reviews in biotechnology, 2016 - Taylor & Francis
Molecular markers, due to their stability, cost-effectiveness and ease of use provide an
immensely popular tool for a variety of applications including genome map**, gene …

Investigating clinical issues by genoty** of medically important fungi: why and how?

A Alanio, M Desnos-Ollivier… - Clinical microbiology …, 2017 - Am Soc Microbiol
Genoty** studies of medically important fungi have addressed elucidation of outbreaks,
nosocomial transmissions, infection routes, and genotype-phenotype correlations, of which …

Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing

CN Schoebel, S Brodbeck, D Buehler… - Journal of …, 2013 - academic.oup.com
Microsatellites, also known as simple sequence repeats (SSRs), are among the most
commonly used marker types in evolutionary and ecological studies. Next Generation …

Mining and validation of novel genoty**-by-sequencing (GBS)-based simple sequence repeats (SSRs) and their application for the estimation of the genetic …

K Riangwong, S Wanchana, W Aesomnuk… - Horticulture …, 2020 - academic.oup.com
Coconut (Cocos nucifera L.) is an important economic crop in tropical countries. However,
the lack of a complete reference genome and the limitations of usable DNA markers hinder …

Detecting tandem repeats in DNA using Ramanujan filter bank

SV Tenneti, PP Vaidyanathan - 2016 IEEE International …, 2016 - ieeexplore.ieee.org
Tandem repeats are periodic segments in the DNA. They play an important role in forensics,
tracing population evolution, genetic disorders and so on. Locating them in long DNA …

Mining of microsatellites using next generation sequencing of seabuckthorn (Hippophae rhamnoides L.) transcriptome

A Jain, S Chaudhary, PC Sharma - Physiology and Molecular Biology of …, 2014 - Springer
Gene based microsatellite markers are becoming more popular as compared to traditional
random genomic microsatellite markers due to rapid and inexpensive method of isolation …

Krait2: a versatile software for microsatellite investigation, visualization and marker development

L Du, J Chen, D Sun, K Zhao, Q Zeng, N Yang - BMC genomics, 2025 - Springer
Background Microsatellites are highly polymorphic repeat sequences ubiquitously
interspersed throughout almost all genomes which are widely used as powerful molecular …

Genome distribution and validation of novel microsatellite markers of Fusarium verticillioides and their transferability to other Fusarium species

KY Leyva-Madrigal, CP Larralde-Corona… - Journal of …, 2014 - Elsevier
Improved population studies in the fungus Fusarium verticillioides require the development
of reliable microsatellite markers. Here we report a set of ten microsatellite loci that can be …

SSR identification and marker development for sago palm based on NGS genome data

D Purwoko, IC Cartealy, T Tajuddin, D Dinarti… - Breeding …, 2019 - jstage.jst.go.jp
Abstract Sago palm (Metroxylon sagu Rottb.) is one of the most productive carbohydrate-
producing crops. Unfortunately, only limited information regarding sago palm genetics is …

SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions

CWD Dantas, SR da Costa Neto, SIA Alves… - BMC …, 2024 - Springer
Background Tandem repeats are specific sequences in genomic DNA repeated in tandem
that are present in all organisms. Among the subcategories of TRs we have Satellite repeats …