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Diffusion models in bioinformatics and computational biology
Denoising diffusion models embody a type of generative artificial intelligence that can be
applied in computer vision, natural language processing and bioinformatics. In this Review …
applied in computer vision, natural language processing and bioinformatics. In this Review …
Machine learning interatomic potentials and long-range physics
Advances in machine learned interatomic potentials (MLIPs), such as those using neural
networks, have resulted in short-range models that can infer interaction energies with near …
networks, have resulted in short-range models that can infer interaction energies with near …
Accurate global machine learning force fields for molecules with hundreds of atoms
Global machine learning force fields, with the capacity to capture collective interactions in
molecular systems, now scale up to a few dozen atoms due to considerable growth of model …
molecular systems, now scale up to a few dozen atoms due to considerable growth of model …
Surface stratification determines the interfacial water structure of simple electrolyte solutions
The distribution of ions at the air/water interface plays a decisive role in many natural
processes. Several studies have reported that larger ions tend to be surface-active, implying …
processes. Several studies have reported that larger ions tend to be surface-active, implying …
Atomistic understanding of two-dimensional electrocatalysts from first principles
Two-dimensional electrocatalysts have attracted great interest in recent years for renewable
energy applications. However, the atomistic mechanisms are still under debate. Here we …
energy applications. However, the atomistic mechanisms are still under debate. Here we …
[HTML][HTML] A deep potential model with long-range electrostatic interactions
Machine learning models for the potential energy of multi-atomic systems, such as the deep
potential (DP) model, make molecular simulations with the accuracy of quantum mechanical …
potential (DP) model, make molecular simulations with the accuracy of quantum mechanical …
How machine learning can accelerate electrocatalysis discovery and optimization
Advances in machine learning (ML) provide the means to bypass bottlenecks in the
discovery of new electrocatalysts using traditional approaches. In this review, we highlight …
discovery of new electrocatalysts using traditional approaches. In this review, we highlight …
Incorporating long-range electrostatics in neural network potentials via variational charge equilibration from shortsighted ingredients
We present a new approach to construct machine-learned interatomic potentials including
long-range electrostatic interactions based on a charge equilibration scheme. This new …
long-range electrostatic interactions based on a charge equilibration scheme. This new …
Machine learning force fields for molecular liquids: Ethylene Carbonate/Ethyl Methyl Carbonate binary solvent
Highly accurate ab initio molecular dynamics (MD) methods are the gold standard for
studying molecular mechanisms in the condensed phase, however, they are too expensive …
studying molecular mechanisms in the condensed phase, however, they are too expensive …
Universal machine learning for the response of atomistic systems to external fields
Abstract Machine learned interatomic interaction potentials have enabled efficient and
accurate molecular simulations of closed systems. However, external fields, which can …
accurate molecular simulations of closed systems. However, external fields, which can …