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Analysing and interpreting DNA methylation data
C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …
of biological processes and diseases. The technology is now available for studying DNA …
Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
Growing evidence shows that epigenetic mechanisms contribute to complex traits, with
implications across many fields of biology. In plant ecology, recent studies have attempted to …
implications across many fields of biology. In plant ecology, recent studies have attempted to …
A compendium of genetic regulatory effects across pig tissues
Abstract The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been
established to develop a public resource of genetic regulatory variants in livestock, which is …
established to develop a public resource of genetic regulatory variants in livestock, which is …
The DNA methylation landscape of human early embryos
H Guo, P Zhu, L Yan, R Li, B Hu, Y Lian, J Yan, X Ren… - Nature, 2014 - nature.com
DNA methylation is a crucial element in the epigenetic regulation of mammalian embryonic
development,,,,. However, its dynamic patterns have not been analysed at the genome scale …
development,,,,. However, its dynamic patterns have not been analysed at the genome scale …
Comprehensive analysis of DNA methylation data with RnBeads
RnBeads is a software tool for large-scale analysis and interpretation of DNA methylation
data, providing a user-friendly analysis workflow that yields detailed hypertext reports …
data, providing a user-friendly analysis workflow that yields detailed hypertext reports …
DNA methylation loss in late-replicating domains is linked to mitotic cell division
DNA methylation loss occurs frequently in cancer genomes, primarily within lamina-
associated, late-replicating regions termed partially methylated domains (PMDs). We …
associated, late-replicating regions termed partially methylated domains (PMDs). We …
Lentiviral gene therapy for X-linked chronic granulomatous disease
Chronic granulomatous disease (CGD) is a rare inherited disorder of phagocytic cells,. We
report the initial results of nine severely affected X-linked CGD (X-CGD) patients who …
report the initial results of nine severely affected X-linked CGD (X-CGD) patients who …
Single-cell DNA methylome sequencing of human preimplantation embryos
DNA methylation is a crucial layer of epigenetic regulation during mammalian embryonic
development,–. Although the DNA methylome of early human embryos has been analyzed …
development,–. Although the DNA methylome of early human embryos has been analyzed …
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
Epigenome modulation potentially provides a mechanism for organisms to adapt, within and
between generations. However, neither the extent to which this occurs, nor the mechanisms …
between generations. However, neither the extent to which this occurs, nor the mechanisms …
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
Data from both bulk and single-cell whole-genome DNA methylation experiments are under-
utilized in many ways. This is attributable to inefficient map** of methylation sequencing …
utilized in many ways. This is attributable to inefficient map** of methylation sequencing …